Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 AC009336.1-201ENST00000608941 1553 ntBASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 NKILA-202ENST00000614771 2598 ntBASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 LINC00265-3P-201ENST00000447588 903 ntBASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 NSUN5P1-202ENST00000421140 1535 ntBASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 NSUN5P2-203ENST00000457352 1529 ntBASIC16.65■□□□□ 0.26
VPS29Q9UBQ0 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
VPS29Q9UBQ0 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 AC132938.5-201ENST00000624980 1813 ntBASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 AC003669.1-201ENST00000334569 611 ntBASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 IGHV3-47-201ENST00000425060 335 ntBASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 INTS4P1-201ENST00000438455 1935 ntBASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS29Q9UBQ0 AC011676.5-201ENST00000624864 2660 ntBASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 AC096582.2-201ENST00000510860 516 ntBASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 BNIP3P18-201ENST00000593976 575 ntBASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 AL358472.4-201ENST00000633140 710 ntBASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VPS29Q9UBQ0 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 AL135999.2-201ENST00000622438 1686 ntBASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms