Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD1Q96NR3 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 PRYP5-201ENST00000451909 266 ntBASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 AC148477.8-201ENST00000624298 468 ntBASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD1Q96NR3 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 RPS2P28-201ENST00000314255 741 ntBASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 RPS2P1-201ENST00000434010 821 ntBASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 AC018712.1-201ENST00000455767 687 ntBASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 AC079776.4-201ENST00000511039 504 ntBASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 AC106820.2-201ENST00000563775 3264 ntBASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PTCHD1Q96NR3 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 AC046185.3-201ENST00000623228 1824 ntBASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms