Protein–RNA interactions for Protein: Q92854

SEMA4D, Semaphorin-4D, humanhuman

Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4DQ92854 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
SEMA4DQ92854 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.58
SEMA4DQ92854 PCDHA12-202ENST00000613593 2588 ntBASIC18.64■□□□□ 0.57
SEMA4DQ92854 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.64■□□□□ 0.57
SEMA4DQ92854 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.64■□□□□ 0.57
SEMA4DQ92854 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SEMA4DQ92854 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA4DQ92854 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA4DQ92854 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA4DQ92854 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA4DQ92854 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.64■□□□□ 0.57
SEMA4DQ92854 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.64■□□□□ 0.57
SEMA4DQ92854 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA4DQ92854 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA4DQ92854 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.64■□□□□ 0.57
SEMA4DQ92854 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA4DQ92854 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SEMA4DQ92854 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.64■□□□□ 0.57
SEMA4DQ92854 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.64■□□□□ 0.57
SEMA4DQ92854 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SEMA4DQ92854 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA4DQ92854 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SEMA4DQ92854 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.63■□□□□ 0.57
SEMA4DQ92854 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SEMA4DQ92854 LINC00982-205ENST00000420957 435 ntBASIC18.63■□□□□ 0.57
SEMA4DQ92854 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SEMA4DQ92854 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.63■□□□□ 0.57
SEMA4DQ92854 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.63■□□□□ 0.57
SEMA4DQ92854 AL691432.3-201ENST00000621860 400 ntBASIC18.63■□□□□ 0.57
SEMA4DQ92854 AL139288.1-201ENST00000623748 933 ntBASIC18.63■□□□□ 0.57
SEMA4DQ92854 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SEMA4DQ92854 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.63■□□□□ 0.57
SEMA4DQ92854 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.63■□□□□ 0.57
SEMA4DQ92854 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
SEMA4DQ92854 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.63■□□□□ 0.57
SEMA4DQ92854 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.63■□□□□ 0.57
SEMA4DQ92854 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.63■□□□□ 0.57
SEMA4DQ92854 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SEMA4DQ92854 AC020916.1-201ENST00000587762 1774 ntBASIC18.63■□□□□ 0.57
SEMA4DQ92854 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SEMA4DQ92854 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
SEMA4DQ92854 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.62■□□□□ 0.57
SEMA4DQ92854 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.62■□□□□ 0.57
SEMA4DQ92854 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.62■□□□□ 0.57
SEMA4DQ92854 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.62■□□□□ 0.57
SEMA4DQ92854 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA4DQ92854 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA4DQ92854 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
SEMA4DQ92854 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.62■□□□□ 0.57
SEMA4DQ92854 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA4DQ92854 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.62■□□□□ 0.57
SEMA4DQ92854 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA4DQ92854 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA4DQ92854 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA4DQ92854 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA4DQ92854 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA4DQ92854 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.62■□□□□ 0.57
SEMA4DQ92854 ACTG1P4-201ENST00000425123 1122 ntBASIC18.62■□□□□ 0.57
SEMA4DQ92854 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.62■□□□□ 0.57
SEMA4DQ92854 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
SEMA4DQ92854 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.62■□□□□ 0.57
SEMA4DQ92854 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA4DQ92854 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.62■□□□□ 0.57
SEMA4DQ92854 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.62■□□□□ 0.57
SEMA4DQ92854 LINC01711-201ENST00000598340 967 ntBASIC18.62■□□□□ 0.57
SEMA4DQ92854 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.62■□□□□ 0.57
SEMA4DQ92854 AL022326.1-202ENST00000641533 845 ntBASIC18.62■□□□□ 0.57
SEMA4DQ92854 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA4DQ92854 EGFEM1P-202ENST00000431685 1563 ntBASIC18.62■□□□□ 0.57
SEMA4DQ92854 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA4DQ92854 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.62■□□□□ 0.57
SEMA4DQ92854 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA4DQ92854 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SEMA4DQ92854 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA4DQ92854 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SEMA4DQ92854 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SEMA4DQ92854 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SEMA4DQ92854 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SEMA4DQ92854 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SEMA4DQ92854 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.61■□□□□ 0.57
SEMA4DQ92854 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SEMA4DQ92854 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SEMA4DQ92854 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms