Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VRK3Q8IV63 LINC00982-205ENST00000420957 435 ntBASIC16.95■□□□□ 0.3
VRK3Q8IV63 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.95■□□□□ 0.3
VRK3Q8IV63 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.95■□□□□ 0.3
VRK3Q8IV63 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.95■□□□□ 0.3
VRK3Q8IV63 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.95■□□□□ 0.3
VRK3Q8IV63 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.95■□□□□ 0.3
VRK3Q8IV63 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.95■□□□□ 0.3
VRK3Q8IV63 AC104692.2-201ENST00000603054 253 ntBASIC16.95■□□□□ 0.3
VRK3Q8IV63 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.95■□□□□ 0.3
VRK3Q8IV63 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.95■□□□□ 0.3
VRK3Q8IV63 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
VRK3Q8IV63 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
VRK3Q8IV63 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
VRK3Q8IV63 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VRK3Q8IV63 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VRK3Q8IV63 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VRK3Q8IV63 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VRK3Q8IV63 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VRK3Q8IV63 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
VRK3Q8IV63 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VRK3Q8IV63 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VRK3Q8IV63 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VRK3Q8IV63 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VRK3Q8IV63 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VRK3Q8IV63 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.94■□□□□ 0.3
VRK3Q8IV63 SCARNA2-201ENST00000458748 420 ntBASIC16.94■□□□□ 0.3
VRK3Q8IV63 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 AL121894.2-201ENST00000602977 491 ntBASIC16.94■□□□□ 0.3
VRK3Q8IV63 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VRK3Q8IV63 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VRK3Q8IV63 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VRK3Q8IV63 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VRK3Q8IV63 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VRK3Q8IV63 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.94■□□□□ 0.3
VRK3Q8IV63 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VRK3Q8IV63 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VRK3Q8IV63 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
VRK3Q8IV63 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VRK3Q8IV63 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VRK3Q8IV63 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VRK3Q8IV63 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VRK3Q8IV63 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VRK3Q8IV63 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 FAM197Y8-203ENST00000450145 560 ntBASIC16.93■□□□□ 0.3
VRK3Q8IV63 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VRK3Q8IV63 AC148477.8-201ENST00000624298 468 ntBASIC16.93■□□□□ 0.3
VRK3Q8IV63 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VRK3Q8IV63 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 AC092053.1-201ENST00000605787 1936 ntBASIC16.93■□□□□ 0.3
VRK3Q8IV63 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VRK3Q8IV63 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VRK3Q8IV63 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VRK3Q8IV63 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
VRK3Q8IV63 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VRK3Q8IV63 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
VRK3Q8IV63 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.92■□□□□ 0.3
VRK3Q8IV63 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VRK3Q8IV63 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms