Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHFQ7M4L6 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHFQ7M4L6 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHFQ7M4L6 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHFQ7M4L6 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHFQ7M4L6 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHFQ7M4L6 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHFQ7M4L6 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHFQ7M4L6 FAM8A6P-201ENST00000407496 1135 ntBASIC15.73■□□□□ 0.11
SHFQ7M4L6 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHFQ7M4L6 COX11P1-201ENST00000489116 835 ntBASIC15.73■□□□□ 0.11
SHFQ7M4L6 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
SHFQ7M4L6 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC15.73■□□□□ 0.11
SHFQ7M4L6 DUT-205ENST00000558813 769 ntTSL 2 BASIC15.73■□□□□ 0.11
SHFQ7M4L6 AL023973.1-201ENST00000624619 620 ntBASIC15.73■□□□□ 0.11
SHFQ7M4L6 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.73■□□□□ 0.11
SHFQ7M4L6 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.73■□□□□ 0.11
SHFQ7M4L6 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHFQ7M4L6 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC15.73■□□□□ 0.11
SHFQ7M4L6 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHFQ7M4L6 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
SHFQ7M4L6 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHFQ7M4L6 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHFQ7M4L6 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHFQ7M4L6 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHFQ7M4L6 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHFQ7M4L6 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
SHFQ7M4L6 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHFQ7M4L6 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.73■□□□□ 0.11
SHFQ7M4L6 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
SHFQ7M4L6 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
SHFQ7M4L6 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
SHFQ7M4L6 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.72■□□□□ 0.11
SHFQ7M4L6 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.72■□□□□ 0.11
SHFQ7M4L6 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.72■□□□□ 0.11
SHFQ7M4L6 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 LINC01311-201ENST00000565162 1445 ntBASIC15.72■□□□□ 0.11
SHFQ7M4L6 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 DDT-203ENST00000403754 569 ntTSL 3 BASIC15.72■□□□□ 0.11
SHFQ7M4L6 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 TSPY12P-201ENST00000421279 868 ntBASIC15.72■□□□□ 0.11
SHFQ7M4L6 CD70-202ENST00000423145 881 ntTSL 2 BASIC15.72■□□□□ 0.11
SHFQ7M4L6 AL596275.1-201ENST00000423464 877 ntBASIC15.72■□□□□ 0.11
SHFQ7M4L6 DDT-206ENST00000430101 573 ntTSL 2 BASIC15.72■□□□□ 0.11
SHFQ7M4L6 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC15.72■□□□□ 0.11
SHFQ7M4L6 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
SHFQ7M4L6 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 BX276092.7-203ENST00000637198 1536 ntBASIC15.72■□□□□ 0.11
SHFQ7M4L6 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
SHFQ7M4L6 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
SHFQ7M4L6 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
SHFQ7M4L6 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHFQ7M4L6 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHFQ7M4L6 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHFQ7M4L6 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHFQ7M4L6 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHFQ7M4L6 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.71■□□□□ 0.11
SHFQ7M4L6 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC15.71■□□□□ 0.11
SHFQ7M4L6 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.71■□□□□ 0.11
SHFQ7M4L6 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHFQ7M4L6 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHFQ7M4L6 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHFQ7M4L6 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHFQ7M4L6 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHFQ7M4L6 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
SHFQ7M4L6 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHFQ7M4L6 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHFQ7M4L6 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHFQ7M4L6 AC087499.1-201ENST00000418141 1075 ntBASIC15.71■□□□□ 0.11
SHFQ7M4L6 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHFQ7M4L6 PPOX-214ENST00000535223 664 ntTSL 3 BASIC15.71■□□□□ 0.11
SHFQ7M4L6 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC15.71■□□□□ 0.11
SHFQ7M4L6 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC15.71■□□□□ 0.11
SHFQ7M4L6 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC15.71■□□□□ 0.11
SHFQ7M4L6 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
SHFQ7M4L6 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15.71■□□□□ 0.11
SHFQ7M4L6 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.71■□□□□ 0.11
SHFQ7M4L6 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC15.71■□□□□ 0.11
SHFQ7M4L6 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHFQ7M4L6 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
SHFQ7M4L6 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
SHFQ7M4L6 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms