Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 AC092329.2-201ENST00000598402 547 ntBASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 LINC02012-201ENST00000608206 1725 ntBASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.24■□□□□ 0.35
ZNF549Q6P9A3 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 AC092053.1-201ENST00000605787 1936 ntBASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 AL121761.2-201ENST00000598007 1648 ntBASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 AC104819.1-201ENST00000504587 486 ntBASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 AC012615.1-201ENST00000565797 1299 ntBASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 AC114341.1-201ENST00000618070 349 ntBASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 AC073592.5-201ENST00000624854 528 ntBASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 AL135999.2-201ENST00000622438 1686 ntBASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ZNF549Q6P9A3 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 STK19B-204ENST00000512515 211 ntBASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 PMPCAP1-201ENST00000508114 1576 ntBASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF549Q6P9A3 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms