Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
KRT39Q6A163 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
KRT39Q6A163 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
KRT39Q6A163 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
KRT39Q6A163 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT39Q6A163 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT39Q6A163 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
KRT39Q6A163 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT39Q6A163 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
KRT39Q6A163 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.73■□□□□ 0.59
KRT39Q6A163 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT39Q6A163 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
KRT39Q6A163 AKR1C7P-201ENST00000305623 895 ntBASIC18.73■□□□□ 0.59
KRT39Q6A163 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT39Q6A163 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT39Q6A163 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT39Q6A163 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
KRT39Q6A163 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
KRT39Q6A163 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.73■□□□□ 0.59
KRT39Q6A163 PRYP5-201ENST00000451909 266 ntBASIC18.73■□□□□ 0.59
KRT39Q6A163 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT39Q6A163 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT39Q6A163 IFNL4P1-201ENST00000607083 540 ntBASIC18.73■□□□□ 0.59
KRT39Q6A163 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
KRT39Q6A163 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.73■□□□□ 0.59
KRT39Q6A163 AL139288.1-201ENST00000623748 933 ntBASIC18.73■□□□□ 0.59
KRT39Q6A163 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT39Q6A163 LINC02012-201ENST00000608206 1725 ntBASIC18.73■□□□□ 0.59
KRT39Q6A163 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
KRT39Q6A163 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT39Q6A163 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
KRT39Q6A163 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
KRT39Q6A163 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
KRT39Q6A163 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
KRT39Q6A163 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.73■□□□□ 0.59
KRT39Q6A163 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
KRT39Q6A163 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
KRT39Q6A163 AC012313.1-201ENST00000593393 3059 ntBASIC18.72■□□□□ 0.59
KRT39Q6A163 AL356309.3-201ENST00000624132 1934 ntBASIC18.72■□□□□ 0.59
KRT39Q6A163 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT39Q6A163 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT39Q6A163 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
KRT39Q6A163 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT39Q6A163 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT39Q6A163 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
KRT39Q6A163 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
KRT39Q6A163 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
KRT39Q6A163 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
KRT39Q6A163 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
KRT39Q6A163 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT39Q6A163 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
KRT39Q6A163 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.72■□□□□ 0.59
KRT39Q6A163 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.72■□□□□ 0.59
KRT39Q6A163 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.72■□□□□ 0.59
KRT39Q6A163 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
KRT39Q6A163 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.72■□□□□ 0.59
KRT39Q6A163 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.72■□□□□ 0.59
KRT39Q6A163 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.72■□□□□ 0.59
KRT39Q6A163 NKAPP1-205ENST00000585790 367 ntBASIC18.72■□□□□ 0.59
KRT39Q6A163 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.72■□□□□ 0.59
KRT39Q6A163 AC004817.3-201ENST00000602957 2129 ntBASIC18.72■□□□□ 0.59
KRT39Q6A163 AC008608.2-201ENST00000606089 416 ntBASIC18.72■□□□□ 0.59
KRT39Q6A163 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
KRT39Q6A163 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT39Q6A163 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
KRT39Q6A163 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT39Q6A163 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT39Q6A163 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
KRT39Q6A163 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
KRT39Q6A163 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
KRT39Q6A163 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
KRT39Q6A163 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.71■□□□□ 0.59
KRT39Q6A163 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
KRT39Q6A163 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
KRT39Q6A163 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.71■□□□□ 0.59
KRT39Q6A163 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
KRT39Q6A163 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
KRT39Q6A163 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.71■□□□□ 0.59
KRT39Q6A163 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
KRT39Q6A163 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
KRT39Q6A163 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
KRT39Q6A163 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
KRT39Q6A163 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
KRT39Q6A163 ACTG1P4-201ENST00000425123 1122 ntBASIC18.71■□□□□ 0.59
KRT39Q6A163 DUSP5P1-201ENST00000441325 1139 ntBASIC18.71■□□□□ 0.59
KRT39Q6A163 SAPCD2P3-201ENST00000455031 850 ntBASIC18.71■□□□□ 0.59
KRT39Q6A163 FGFR3P6-201ENST00000457012 610 ntBASIC18.71■□□□□ 0.59
KRT39Q6A163 BX005266.1-201ENST00000473402 457 ntBASIC18.71■□□□□ 0.59
KRT39Q6A163 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.71■□□□□ 0.59
KRT39Q6A163 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
KRT39Q6A163 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.71■□□□□ 0.59
KRT39Q6A163 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.71■□□□□ 0.59
KRT39Q6A163 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.71■□□□□ 0.59
KRT39Q6A163 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.71■□□□□ 0.59
KRT39Q6A163 AL022326.1-202ENST00000641533 845 ntBASIC18.71■□□□□ 0.59
KRT39Q6A163 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
KRT39Q6A163 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.71■□□□□ 0.59
KRT39Q6A163 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.71■□□□□ 0.59
KRT39Q6A163 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
KRT39Q6A163 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms