Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC10.59□□□□□ -0.71
HSPG2P98160 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC10.59□□□□□ -0.71
HSPG2P98160 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC10.59□□□□□ -0.71
HSPG2P98160 PRR29-204ENST00000577953 565 ntTSL 4 BASIC10.59□□□□□ -0.71
HSPG2P98160 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
HSPG2P98160 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 AC092506.1-202ENST00000401022 528 ntBASIC10.59□□□□□ -0.71
HSPG2P98160 FXNP2-201ENST00000411625 547 ntBASIC10.59□□□□□ -0.71
HSPG2P98160 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC10.59□□□□□ -0.71
HSPG2P98160 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC10.59□□□□□ -0.71
HSPG2P98160 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC10.59□□□□□ -0.71
HSPG2P98160 USP32P1-208ENST00000506594 1164 ntBASIC10.59□□□□□ -0.71
HSPG2P98160 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC10.59□□□□□ -0.71
HSPG2P98160 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC10.59□□□□□ -0.71
HSPG2P98160 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 AC073389.1-201ENST00000595595 795 ntBASIC10.59□□□□□ -0.71
HSPG2P98160 SLC7A15P-201ENST00000424028 1363 ntBASIC10.59□□□□□ -0.71
HSPG2P98160 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 HNRNPRP1-201ENST00000453465 1695 ntBASIC10.59□□□□□ -0.71
HSPG2P98160 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC10.59□□□□□ -0.71
HSPG2P98160 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC10.59□□□□□ -0.71
HSPG2P98160 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC10.59□□□□□ -0.71
HSPG2P98160 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC10.59□□□□□ -0.71
HSPG2P98160 TTTY23B-201ENST00000442790 549 ntBASIC10.59□□□□□ -0.71
HSPG2P98160 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC10.59□□□□□ -0.71
HSPG2P98160 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 EMC4-209ENST00000559421 497 ntTSL 2 BASIC10.59□□□□□ -0.71
HSPG2P98160 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC10.59□□□□□ -0.71
HSPG2P98160 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC10.59□□□□□ -0.71
HSPG2P98160 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC10.59□□□□□ -0.71
HSPG2P98160 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC10.59□□□□□ -0.71
HSPG2P98160 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC10.59□□□□□ -0.71
HSPG2P98160 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.71
HSPG2P98160 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.71
HSPG2P98160 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC10.58□□□□□ -0.72
HSPG2P98160 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC10.58□□□□□ -0.72
HSPG2P98160 AL031055.1-201ENST00000606362 631 ntBASIC10.58□□□□□ -0.72
HSPG2P98160 AC007967.4-201ENST00000614700 386 ntBASIC10.58□□□□□ -0.72
HSPG2P98160 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC10.58□□□□□ -0.72
HSPG2P98160 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
HSPG2P98160 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
HSPG2P98160 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC10.58□□□□□ -0.72
HSPG2P98160 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 SPDYE19P-201ENST00000338590 713 ntBASIC10.58□□□□□ -0.72
HSPG2P98160 AC105233.2-201ENST00000523697 349 ntBASIC10.58□□□□□ -0.72
HSPG2P98160 AF228730.5-201ENST00000530288 346 ntBASIC10.58□□□□□ -0.72
HSPG2P98160 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC10.58□□□□□ -0.72
HSPG2P98160 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC10.58□□□□□ -0.72
HSPG2P98160 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC10.58□□□□□ -0.72
HSPG2P98160 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC10.58□□□□□ -0.72
HSPG2P98160 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC10.58□□□□□ -0.72
HSPG2P98160 AC099336.1-201ENST00000417053 1171 ntBASIC10.58□□□□□ -0.72
HSPG2P98160 USB1-202ENST00000423271 1217 ntTSL 2 BASIC10.58□□□□□ -0.72
HSPG2P98160 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 RAB35-202ENST00000534951 939 ntTSL 2 BASIC10.58□□□□□ -0.72
HSPG2P98160 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
HSPG2P98160 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
HSPG2P98160 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
HSPG2P98160 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
HSPG2P98160 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC10.58□□□□□ -0.72
HSPG2P98160 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC10.58□□□□□ -0.72
HSPG2P98160 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC10.58□□□□□ -0.72
HSPG2P98160 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC10.58□□□□□ -0.72
HSPG2P98160 MIR6727-201ENST00000620702 65 ntBASIC10.58□□□□□ -0.72
HSPG2P98160 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC10.58□□□□□ -0.72
HSPG2P98160 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC10.58□□□□□ -0.72
HSPG2P98160 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC10.58□□□□□ -0.72
HSPG2P98160 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms