Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
ABCA4P78363 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
ABCA4P78363 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ABCA4P78363 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC14.89□□□□□ -0.03
ABCA4P78363 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ABCA4P78363 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ABCA4P78363 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.89□□□□□ -0.03
ABCA4P78363 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.89□□□□□ -0.03
ABCA4P78363 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
ABCA4P78363 STK25P1-201ENST00000585406 838 ntBASIC14.89□□□□□ -0.03
ABCA4P78363 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC14.89□□□□□ -0.03
ABCA4P78363 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCA4P78363 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
ABCA4P78363 Z92544.3-201ENST00000624747 417 ntBASIC14.89□□□□□ -0.03
ABCA4P78363 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.89□□□□□ -0.03
ABCA4P78363 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ABCA4P78363 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
ABCA4P78363 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ABCA4P78363 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
ABCA4P78363 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCA4P78363 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCA4P78363 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC14.88□□□□□ -0.03
ABCA4P78363 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC14.88□□□□□ -0.03
ABCA4P78363 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCA4P78363 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC14.88□□□□□ -0.03
ABCA4P78363 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC14.88□□□□□ -0.03
ABCA4P78363 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCA4P78363 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCA4P78363 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
ABCA4P78363 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
ABCA4P78363 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC14.88□□□□□ -0.03
ABCA4P78363 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCA4P78363 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
ABCA4P78363 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.88□□□□□ -0.03
ABCA4P78363 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC14.88□□□□□ -0.03
ABCA4P78363 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ABCA4P78363 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCA4P78363 IGHV3-52-201ENST00000519770 353 ntBASIC14.88□□□□□ -0.03
ABCA4P78363 AC109322.1-201ENST00000524499 1264 ntBASIC14.88□□□□□ -0.03
ABCA4P78363 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.88□□□□□ -0.03
ABCA4P78363 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC14.88□□□□□ -0.03
ABCA4P78363 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.88□□□□□ -0.03
ABCA4P78363 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.88□□□□□ -0.03
ABCA4P78363 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.88□□□□□ -0.03
ABCA4P78363 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.88□□□□□ -0.03
ABCA4P78363 AC091812.2-201ENST00000619081 385 ntBASIC14.88□□□□□ -0.03
ABCA4P78363 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCA4P78363 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCA4P78363 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCA4P78363 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCA4P78363 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCA4P78363 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCA4P78363 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
ABCA4P78363 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC14.88□□□□□ -0.03
ABCA4P78363 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCA4P78363 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC14.87□□□□□ -0.03
ABCA4P78363 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
ABCA4P78363 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC14.87□□□□□ -0.03
ABCA4P78363 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 AL627223.1-201ENST00000416693 442 ntBASIC14.87□□□□□ -0.03
ABCA4P78363 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC14.87□□□□□ -0.03
ABCA4P78363 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 EFTUD1P1-204ENST00000560401 1798 ntBASIC14.87□□□□□ -0.03
ABCA4P78363 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC14.87□□□□□ -0.03
ABCA4P78363 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC14.87□□□□□ -0.03
ABCA4P78363 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 AC106820.2-201ENST00000563775 3264 ntBASIC14.87□□□□□ -0.03
ABCA4P78363 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC14.87□□□□□ -0.03
ABCA4P78363 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC14.87□□□□□ -0.03
ABCA4P78363 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
ABCA4P78363 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC14.87□□□□□ -0.03
ABCA4P78363 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.87□□□□□ -0.03
ABCA4P78363 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.87□□□□□ -0.03
ABCA4P78363 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.87□□□□□ -0.03
ABCA4P78363 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.87□□□□□ -0.03
ABCA4P78363 AQP6-205ENST00000618286 829 ntTSL 5 BASIC14.87□□□□□ -0.03
ABCA4P78363 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
ABCA4P78363 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
ABCA4P78363 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC14.87□□□□□ -0.03
ABCA4P78363 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ABCA4P78363 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
ABCA4P78363 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
ABCA4P78363 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ABCA4P78363 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms