Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNF4P78317 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNF4P78317 LINC00982-205ENST00000420957 435 ntBASIC16.07■□□□□ 0.16
RNF4P78317 ACTG1P4-201ENST00000425123 1122 ntBASIC16.07■□□□□ 0.16
RNF4P78317 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.07■□□□□ 0.16
RNF4P78317 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.07■□□□□ 0.16
RNF4P78317 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.07■□□□□ 0.16
RNF4P78317 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.07■□□□□ 0.16
RNF4P78317 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
RNF4P78317 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.07■□□□□ 0.16
RNF4P78317 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.07■□□□□ 0.16
RNF4P78317 AC004706.3-202ENST00000621574 984 ntBASIC16.07■□□□□ 0.16
RNF4P78317 AC116407.3-201ENST00000623905 1129 ntBASIC16.07■□□□□ 0.16
RNF4P78317 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.07■□□□□ 0.16
RNF4P78317 AL138688.1-201ENST00000624851 1594 ntBASIC16.07■□□□□ 0.16
RNF4P78317 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNF4P78317 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNF4P78317 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
RNF4P78317 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNF4P78317 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNF4P78317 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
RNF4P78317 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
RNF4P78317 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 OR6D1P-202ENST00000641007 5290 ntBASIC16.06■□□□□ 0.16
RNF4P78317 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
RNF4P78317 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
RNF4P78317 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.06■□□□□ 0.16
RNF4P78317 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.06■□□□□ 0.16
RNF4P78317 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.06■□□□□ 0.16
RNF4P78317 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
RNF4P78317 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 AC243591.1-201ENST00000452967 1364 ntBASIC16.06■□□□□ 0.16
RNF4P78317 KRT18P27-201ENST00000427733 1299 ntBASIC16.06■□□□□ 0.16
RNF4P78317 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.06■□□□□ 0.16
RNF4P78317 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.06■□□□□ 0.16
RNF4P78317 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.06■□□□□ 0.16
RNF4P78317 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.06■□□□□ 0.16
RNF4P78317 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
RNF4P78317 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.06■□□□□ 0.16
RNF4P78317 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RNF4P78317 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF4P78317 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF4P78317 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF4P78317 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF4P78317 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF4P78317 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RNF4P78317 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF4P78317 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF4P78317 IL9RP2-201ENST00000423948 1312 ntBASIC16.05■□□□□ 0.16
RNF4P78317 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF4P78317 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF4P78317 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RNF4P78317 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.05■□□□□ 0.16
RNF4P78317 AL590627.1-203ENST00000421194 1026 ntBASIC16.05■□□□□ 0.16
RNF4P78317 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.05■□□□□ 0.16
RNF4P78317 AC092910.1-201ENST00000482027 1129 ntBASIC16.05■□□□□ 0.16
RNF4P78317 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.05■□□□□ 0.16
RNF4P78317 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.05■□□□□ 0.16
RNF4P78317 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.05■□□□□ 0.16
RNF4P78317 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF4P78317 AL139424.1-201ENST00000607572 797 ntBASIC16.05■□□□□ 0.16
RNF4P78317 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.05■□□□□ 0.16
RNF4P78317 BX640515.1-201ENST00000617215 977 ntBASIC16.05■□□□□ 0.16
RNF4P78317 MIR1199-201ENST00000621445 119 ntBASIC16.05■□□□□ 0.16
RNF4P78317 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RNF4P78317 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.05■□□□□ 0.16
RNF4P78317 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.05■□□□□ 0.16
RNF4P78317 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF4P78317 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
RNF4P78317 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.05■□□□□ 0.16
RNF4P78317 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RNF4P78317 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.05■□□□□ 0.16
RNF4P78317 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF4P78317 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.05■□□□□ 0.16
RNF4P78317 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF4P78317 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF4P78317 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
RNF4P78317 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.04■□□□□ 0.16
RNF4P78317 LINC00896-202ENST00000609602 2128 ntBASIC16.04■□□□□ 0.16
RNF4P78317 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.04■□□□□ 0.16
RNF4P78317 AP002414.3-201ENST00000589352 1468 ntBASIC16.04■□□□□ 0.16
RNF4P78317 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF4P78317 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RNF4P78317 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.04■□□□□ 0.16
RNF4P78317 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms