Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LHX1P48742 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX1P48742 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.34■□□□□ 0.53
LHX1P48742 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LHX1P48742 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LHX1P48742 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LHX1P48742 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
LHX1P48742 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LHX1P48742 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
LHX1P48742 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.33■□□□□ 0.53
LHX1P48742 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LHX1P48742 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LHX1P48742 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LHX1P48742 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
LHX1P48742 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.33■□□□□ 0.52
LHX1P48742 MRPL20P1-201ENST00000400819 433 ntBASIC18.33■□□□□ 0.52
LHX1P48742 CRYGEP-201ENST00000412192 528 ntBASIC18.33■□□□□ 0.52
LHX1P48742 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LHX1P48742 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.33■□□□□ 0.52
LHX1P48742 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.33■□□□□ 0.52
LHX1P48742 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.33■□□□□ 0.52
LHX1P48742 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.33■□□□□ 0.52
LHX1P48742 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.33■□□□□ 0.52
LHX1P48742 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LHX1P48742 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.33■□□□□ 0.52
LHX1P48742 AC004790.2-201ENST00000623588 572 ntBASIC18.33■□□□□ 0.52
LHX1P48742 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LHX1P48742 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LHX1P48742 AL133373.2-201ENST00000623187 2828 ntBASIC18.33■□□□□ 0.52
LHX1P48742 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LHX1P48742 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.33■□□□□ 0.52
LHX1P48742 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LHX1P48742 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
LHX1P48742 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LHX1P48742 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
LHX1P48742 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
LHX1P48742 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LHX1P48742 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX1P48742 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.32■□□□□ 0.52
LHX1P48742 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX1P48742 OR6D1P-202ENST00000641007 5290 ntBASIC18.32■□□□□ 0.52
LHX1P48742 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.32■□□□□ 0.52
LHX1P48742 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX1P48742 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
LHX1P48742 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX1P48742 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX1P48742 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX1P48742 AC067852.2-201ENST00000590513 2313 ntBASIC18.32■□□□□ 0.52
LHX1P48742 PMS2P7-201ENST00000506558 1336 ntBASIC18.32■□□□□ 0.52
LHX1P48742 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.32■□□□□ 0.52
LHX1P48742 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
LHX1P48742 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
LHX1P48742 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
LHX1P48742 MIR940-201ENST00000401276 94 ntBASIC18.32■□□□□ 0.52
LHX1P48742 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.32■□□□□ 0.52
LHX1P48742 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.32■□□□□ 0.52
LHX1P48742 KRT18P3-201ENST00000451602 1288 ntBASIC18.32■□□□□ 0.52
LHX1P48742 POLD2P1-201ENST00000511220 997 ntBASIC18.32■□□□□ 0.52
LHX1P48742 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.32■□□□□ 0.52
LHX1P48742 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX1P48742 MIR4751-201ENST00000578027 74 ntBASIC18.32■□□□□ 0.52
LHX1P48742 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX1P48742 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX1P48742 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX1P48742 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.32■□□□□ 0.52
LHX1P48742 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX1P48742 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX1P48742 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.32■□□□□ 0.52
LHX1P48742 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
LHX1P48742 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX1P48742 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.32■□□□□ 0.52
LHX1P48742 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LHX1P48742 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX1P48742 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
LHX1P48742 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
LHX1P48742 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LHX1P48742 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.31■□□□□ 0.52
LHX1P48742 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
LHX1P48742 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LHX1P48742 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
LHX1P48742 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LHX1P48742 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.31■□□□□ 0.52
LHX1P48742 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
LHX1P48742 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
LHX1P48742 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.31■□□□□ 0.52
LHX1P48742 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.31■□□□□ 0.52
LHX1P48742 VN2R19P-201ENST00000442399 1052 ntBASIC18.31■□□□□ 0.52
LHX1P48742 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.31■□□□□ 0.52
LHX1P48742 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.31■□□□□ 0.52
LHX1P48742 RNA5SP416-201ENST00000516838 111 ntBASIC18.31■□□□□ 0.52
LHX1P48742 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.31■□□□□ 0.52
LHX1P48742 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.31■□□□□ 0.52
LHX1P48742 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.31■□□□□ 0.52
LHX1P48742 AC010654.1-201ENST00000615722 808 ntBASIC18.31■□□□□ 0.52
LHX1P48742 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.31■□□□□ 0.52
LHX1P48742 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LHX1P48742 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
LHX1P48742 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LHX1P48742 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LHX1P48742 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms