Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC010240.3-201ENST00000607688 395 ntBASIC17.47■□□□□ 0.39
PTPN4P29074 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN4P29074 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.47■□□□□ 0.39
PTPN4P29074 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.47■□□□□ 0.39
PTPN4P29074 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.47■□□□□ 0.39
PTPN4P29074 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN4P29074 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN4P29074 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.47■□□□□ 0.39
PTPN4P29074 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.47■□□□□ 0.39
PTPN4P29074 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
PTPN4P29074 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN4P29074 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
PTPN4P29074 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.47■□□□□ 0.39
PTPN4P29074 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN4P29074 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN4P29074 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PTPN4P29074 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
PTPN4P29074 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN4P29074 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.46■□□□□ 0.39
PTPN4P29074 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN4P29074 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN4P29074 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN4P29074 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.46■□□□□ 0.39
PTPN4P29074 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.46■□□□□ 0.39
PTPN4P29074 TSPY22P-201ENST00000427496 604 ntBASIC17.46■□□□□ 0.39
PTPN4P29074 CHCHD2P8-201ENST00000429873 447 ntBASIC17.46■□□□□ 0.39
PTPN4P29074 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.46■□□□□ 0.39
PTPN4P29074 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.46■□□□□ 0.39
PTPN4P29074 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.46■□□□□ 0.39
PTPN4P29074 AP002414.4-201ENST00000589764 1148 ntBASIC17.46■□□□□ 0.39
PTPN4P29074 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.46■□□□□ 0.39
PTPN4P29074 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
PTPN4P29074 SDHAP2-201ENST00000455183 2001 ntBASIC17.46■□□□□ 0.39
PTPN4P29074 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN4P29074 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.46■□□□□ 0.39
PTPN4P29074 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN4P29074 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN4P29074 LINC02199-201ENST00000506655 2702 ntBASIC17.46■□□□□ 0.39
PTPN4P29074 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN4P29074 KRT8P50-201ENST00000562022 1438 ntBASIC17.46■□□□□ 0.39
PTPN4P29074 LINC00304-203ENST00000565008 1864 ntBASIC17.46■□□□□ 0.38
PTPN4P29074 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
PTPN4P29074 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
PTPN4P29074 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PTPN4P29074 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
PTPN4P29074 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PTPN4P29074 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 AL603756.1-201ENST00000606511 2163 ntBASIC17.45■□□□□ 0.38
PTPN4P29074 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PTPN4P29074 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.45■□□□□ 0.38
PTPN4P29074 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.45■□□□□ 0.38
PTPN4P29074 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.45■□□□□ 0.38
PTPN4P29074 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PTPN4P29074 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
PTPN4P29074 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.45■□□□□ 0.38
PTPN4P29074 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.45■□□□□ 0.38
PTPN4P29074 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.45■□□□□ 0.38
PTPN4P29074 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
PTPN4P29074 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.45■□□□□ 0.38
PTPN4P29074 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PTPN4P29074 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PTPN4P29074 AC008741.2-201ENST00000612792 3115 ntBASIC17.45■□□□□ 0.38
PTPN4P29074 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.45■□□□□ 0.38
PTPN4P29074 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PTPN4P29074 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN4P29074 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
PTPN4P29074 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PTPN4P29074 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PTPN4P29074 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.44■□□□□ 0.38
PTPN4P29074 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.44■□□□□ 0.38
PTPN4P29074 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.44■□□□□ 0.38
PTPN4P29074 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.44■□□□□ 0.38
PTPN4P29074 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms