Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
RFX1P22670 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
RFX1P22670 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX1P22670 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX1P22670 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX1P22670 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX1P22670 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.91■□□□□ 0.62
RFX1P22670 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX1P22670 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX1P22670 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.91■□□□□ 0.62
RFX1P22670 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX1P22670 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX1P22670 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
RFX1P22670 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.9■□□□□ 0.62
RFX1P22670 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 AL121761.2-201ENST00000598007 1648 ntBASIC18.9■□□□□ 0.62
RFX1P22670 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.9■□□□□ 0.62
RFX1P22670 AC116353.5-201ENST00000638148 1699 ntBASIC18.9■□□□□ 0.62
RFX1P22670 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
RFX1P22670 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.9■□□□□ 0.62
RFX1P22670 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.9■□□□□ 0.62
RFX1P22670 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.9■□□□□ 0.62
RFX1P22670 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.9■□□□□ 0.62
RFX1P22670 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.9■□□□□ 0.62
RFX1P22670 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 AC096582.2-201ENST00000510860 516 ntBASIC18.9■□□□□ 0.62
RFX1P22670 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.9■□□□□ 0.62
RFX1P22670 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.9■□□□□ 0.62
RFX1P22670 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.9■□□□□ 0.62
RFX1P22670 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.9■□□□□ 0.62
RFX1P22670 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.9■□□□□ 0.62
RFX1P22670 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.9■□□□□ 0.62
RFX1P22670 AC008608.2-201ENST00000606089 416 ntBASIC18.9■□□□□ 0.62
RFX1P22670 AL691403.2-201ENST00000618460 490 ntBASIC18.9■□□□□ 0.62
RFX1P22670 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.9■□□□□ 0.62
RFX1P22670 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.9■□□□□ 0.62
RFX1P22670 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
RFX1P22670 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
RFX1P22670 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.9■□□□□ 0.62
RFX1P22670 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.9■□□□□ 0.62
RFX1P22670 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RFX1P22670 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
RFX1P22670 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.89■□□□□ 0.62
RFX1P22670 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.89■□□□□ 0.62
RFX1P22670 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
RFX1P22670 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.89■□□□□ 0.62
RFX1P22670 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RFX1P22670 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.89■□□□□ 0.61
RFX1P22670 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RFX1P22670 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
RFX1P22670 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RFX1P22670 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RFX1P22670 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.89■□□□□ 0.61
RFX1P22670 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.89■□□□□ 0.61
RFX1P22670 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.89■□□□□ 0.61
RFX1P22670 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.89■□□□□ 0.61
RFX1P22670 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.89■□□□□ 0.61
RFX1P22670 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.89■□□□□ 0.61
RFX1P22670 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.89■□□□□ 0.61
RFX1P22670 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.89■□□□□ 0.61
RFX1P22670 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RFX1P22670 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.89■□□□□ 0.61
RFX1P22670 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.89■□□□□ 0.61
RFX1P22670 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
RFX1P22670 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.89■□□□□ 0.61
RFX1P22670 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RFX1P22670 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RFX1P22670 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
RFX1P22670 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.89■□□□□ 0.61
RFX1P22670 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RFX1P22670 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.89■□□□□ 0.61
RFX1P22670 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RFX1P22670 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.89■□□□□ 0.61
RFX1P22670 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.89■□□□□ 0.61
RFX1P22670 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.89■□□□□ 0.61
RFX1P22670 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
RFX1P22670 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
RFX1P22670 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.89■□□□□ 0.61
RFX1P22670 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
RFX1P22670 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFX1P22670 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.88■□□□□ 0.61
RFX1P22670 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFX1P22670 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFX1P22670 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms