Protein–RNA interactions for Protein: P16619

CCL3L1, C-C motif chemokine 3-like 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL3L1P16619 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CCL3L1P16619 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCL3L1P16619 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC14.34□□□□□ -0.11
CCL3L1P16619 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCL3L1P16619 AC004870.1-201ENST00000315132 882 ntBASIC14.34□□□□□ -0.11
CCL3L1P16619 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCL3L1P16619 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCL3L1P16619 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC14.34□□□□□ -0.11
CCL3L1P16619 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCL3L1P16619 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC14.34□□□□□ -0.11
CCL3L1P16619 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC14.34□□□□□ -0.11
CCL3L1P16619 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
CCL3L1P16619 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCL3L1P16619 SART3-203ENST00000546611 1184 ntBASIC14.34□□□□□ -0.11
CCL3L1P16619 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
CCL3L1P16619 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC14.34□□□□□ -0.11
CCL3L1P16619 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCL3L1P16619 NKAPP1-205ENST00000585790 367 ntBASIC14.34□□□□□ -0.11
CCL3L1P16619 COPE-211ENST00000600932 1144 ntTSL 5 BASIC14.34□□□□□ -0.11
CCL3L1P16619 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCL3L1P16619 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCL3L1P16619 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
CCL3L1P16619 AL356309.3-201ENST00000624132 1934 ntBASIC14.34□□□□□ -0.11
CCL3L1P16619 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCL3L1P16619 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCL3L1P16619 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCL3L1P16619 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCL3L1P16619 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCL3L1P16619 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CCL3L1P16619 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CCL3L1P16619 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CCL3L1P16619 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCL3L1P16619 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CCL3L1P16619 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
CCL3L1P16619 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CCL3L1P16619 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC14.33□□□□□ -0.11
CCL3L1P16619 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CCL3L1P16619 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC14.33□□□□□ -0.11
CCL3L1P16619 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
CCL3L1P16619 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC14.33□□□□□ -0.12
CCL3L1P16619 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC14.33□□□□□ -0.12
CCL3L1P16619 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC14.33□□□□□ -0.12
CCL3L1P16619 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC14.33□□□□□ -0.12
CCL3L1P16619 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 ENSA-206ENST00000361631 725 ntTSL 2 BASIC14.33□□□□□ -0.12
CCL3L1P16619 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC14.33□□□□□ -0.12
CCL3L1P16619 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC14.33□□□□□ -0.12
CCL3L1P16619 SIGLEC30P-201ENST00000455569 941 ntBASIC14.33□□□□□ -0.12
CCL3L1P16619 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 IRF8-202ENST00000562492 946 ntTSL 3 BASIC14.33□□□□□ -0.12
CCL3L1P16619 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC14.33□□□□□ -0.12
CCL3L1P16619 OR6D1P-203ENST00000641209 4860 ntBASIC14.33□□□□□ -0.12
CCL3L1P16619 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC14.33□□□□□ -0.12
CCL3L1P16619 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC14.33□□□□□ -0.12
CCL3L1P16619 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC14.33□□□□□ -0.12
CCL3L1P16619 AL135999.2-201ENST00000622438 1686 ntBASIC14.33□□□□□ -0.12
CCL3L1P16619 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC14.33□□□□□ -0.12
CCL3L1P16619 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCL3L1P16619 SIGLEC16-201ENST00000599858 1437 ntBASIC14.32□□□□□ -0.12
CCL3L1P16619 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
CCL3L1P16619 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC14.32□□□□□ -0.12
CCL3L1P16619 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCL3L1P16619 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCL3L1P16619 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC14.32□□□□□ -0.12
CCL3L1P16619 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCL3L1P16619 AL645608.8-201ENST00000606034 2086 ntBASIC14.32□□□□□ -0.12
CCL3L1P16619 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CCL3L1P16619 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCL3L1P16619 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC14.32□□□□□ -0.12
CCL3L1P16619 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC14.32□□□□□ -0.12
CCL3L1P16619 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCL3L1P16619 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CCL3L1P16619 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC14.32□□□□□ -0.12
CCL3L1P16619 AC012313.1-201ENST00000593393 3059 ntBASIC14.32□□□□□ -0.12
CCL3L1P16619 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCL3L1P16619 CEP83-AS1-201ENST00000623122 2482 ntBASIC14.32□□□□□ -0.12
CCL3L1P16619 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
CCL3L1P16619 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCL3L1P16619 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCL3L1P16619 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC14.32□□□□□ -0.12
CCL3L1P16619 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCL3L1P16619 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
CCL3L1P16619 AC079781.3-201ENST00000449110 356 ntBASIC14.32□□□□□ -0.12
CCL3L1P16619 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC14.32□□□□□ -0.12
CCL3L1P16619 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms