Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 AC016734.2-201ENST00000624325 1377 ntBASIC16.98■□□□□ 0.31
SIX3O95343 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
SIX3O95343 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.98■□□□□ 0.31
SIX3O95343 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX3O95343 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX3O95343 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX3O95343 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX3O95343 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SIX3O95343 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
SIX3O95343 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SIX3O95343 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.97■□□□□ 0.31
SIX3O95343 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
SIX3O95343 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX3O95343 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX3O95343 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX3O95343 BX276092.5-203ENST00000456199 560 ntBASIC16.97■□□□□ 0.31
SIX3O95343 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.97■□□□□ 0.31
SIX3O95343 FAM86EP-206ENST00000510506 987 ntBASIC16.97■□□□□ 0.31
SIX3O95343 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.97■□□□□ 0.31
SIX3O95343 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.97■□□□□ 0.31
SIX3O95343 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.97■□□□□ 0.31
SIX3O95343 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.97■□□□□ 0.31
SIX3O95343 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
SIX3O95343 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.97■□□□□ 0.31
SIX3O95343 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.97■□□□□ 0.31
SIX3O95343 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX3O95343 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX3O95343 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX3O95343 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.97■□□□□ 0.31
SIX3O95343 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX3O95343 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX3O95343 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX3O95343 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX3O95343 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.97■□□□□ 0.31
SIX3O95343 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
SIX3O95343 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX3O95343 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.96■□□□□ 0.31
SIX3O95343 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
SIX3O95343 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
SIX3O95343 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
SIX3O95343 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX3O95343 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX3O95343 AC092068.3-201ENST00000587894 2016 ntBASIC16.96■□□□□ 0.31
SIX3O95343 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SIX3O95343 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
SIX3O95343 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX3O95343 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
SIX3O95343 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX3O95343 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.96■□□□□ 0.31
SIX3O95343 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SIX3O95343 CHCHD2P8-201ENST00000429873 447 ntBASIC16.96■□□□□ 0.31
SIX3O95343 AC246785.2-201ENST00000432512 513 ntBASIC16.96■□□□□ 0.31
SIX3O95343 AC103564.2-201ENST00000432853 1299 ntBASIC16.96■□□□□ 0.31
SIX3O95343 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
SIX3O95343 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.96■□□□□ 0.31
SIX3O95343 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.96■□□□□ 0.31
SIX3O95343 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.96■□□□□ 0.31
SIX3O95343 AL049597.2-201ENST00000565575 961 ntBASIC16.96■□□□□ 0.31
SIX3O95343 AC111152.3-201ENST00000569699 673 ntBASIC16.96■□□□□ 0.31
SIX3O95343 STK25P1-201ENST00000585406 838 ntBASIC16.96■□□□□ 0.31
SIX3O95343 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX3O95343 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SIX3O95343 AL121672.3-201ENST00000608644 468 ntBASIC16.96■□□□□ 0.31
SIX3O95343 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SIX3O95343 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
SIX3O95343 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SIX3O95343 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
SIX3O95343 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX3O95343 PCDHA14-201ENST00000506751 2298 ntBASIC16.96■□□□□ 0.31
SIX3O95343 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX3O95343 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.96■□□□□ 0.31
SIX3O95343 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SIX3O95343 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX3O95343 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SIX3O95343 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
SIX3O95343 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
SIX3O95343 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.96■□□□□ 0.3
SIX3O95343 AL118508.1-201ENST00000613502 2345 ntBASIC16.96■□□□□ 0.3
SIX3O95343 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SIX3O95343 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SIX3O95343 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SIX3O95343 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.96■□□□□ 0.3
SIX3O95343 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX3O95343 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms