Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
MBD4O95243 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
MBD4O95243 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
MBD4O95243 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MBD4O95243 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.67■□□□□ 0.9
MBD4O95243 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.67■□□□□ 0.9
MBD4O95243 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC20.67■□□□□ 0.9
MBD4O95243 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MBD4O95243 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.67■□□□□ 0.9
MBD4O95243 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MBD4O95243 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
MBD4O95243 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC20.67■□□□□ 0.9
MBD4O95243 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
MBD4O95243 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.66■□□□□ 0.9
MBD4O95243 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.66■□□□□ 0.9
MBD4O95243 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
MBD4O95243 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MBD4O95243 AP002414.1-201ENST00000391405 1147 ntBASIC20.66■□□□□ 0.9
MBD4O95243 SLC25A1P3-201ENST00000395415 828 ntBASIC20.66■□□□□ 0.9
MBD4O95243 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MBD4O95243 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MBD4O95243 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
MBD4O95243 SLC4A1APP2-201ENST00000424054 1259 ntBASIC20.66■□□□□ 0.9
MBD4O95243 AC007967.2-201ENST00000432613 625 ntBASIC20.66■□□□□ 0.9
MBD4O95243 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MBD4O95243 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC20.66■□□□□ 0.9
MBD4O95243 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC20.66■□□□□ 0.9
MBD4O95243 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MBD4O95243 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
MBD4O95243 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
MBD4O95243 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
MBD4O95243 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MBD4O95243 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MBD4O95243 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
MBD4O95243 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MBD4O95243 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
MBD4O95243 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MBD4O95243 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MBD4O95243 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MBD4O95243 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
MBD4O95243 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.65■□□□□ 0.9
MBD4O95243 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
MBD4O95243 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
MBD4O95243 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
MBD4O95243 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
MBD4O95243 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MBD4O95243 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MBD4O95243 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
MBD4O95243 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
MBD4O95243 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC20.65■□□□□ 0.9
MBD4O95243 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
MBD4O95243 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MBD4O95243 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
MBD4O95243 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
MBD4O95243 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
MBD4O95243 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MBD4O95243 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MBD4O95243 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.64■□□□□ 0.9
MBD4O95243 CROCCP2-202ENST00000412962 2773 ntBASIC20.64■□□□□ 0.9
MBD4O95243 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.64■□□□□ 0.9
MBD4O95243 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
MBD4O95243 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
MBD4O95243 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MBD4O95243 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MBD4O95243 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
MBD4O95243 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MBD4O95243 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MBD4O95243 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MBD4O95243 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
MBD4O95243 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC20.64■□□□□ 0.89
MBD4O95243 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC20.64■□□□□ 0.89
MBD4O95243 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.64■□□□□ 0.89
MBD4O95243 MED15P5-201ENST00000423150 992 ntBASIC20.64■□□□□ 0.89
MBD4O95243 CIPC-205ENST00000555437 566 ntTSL 3 BASIC20.64■□□□□ 0.89
MBD4O95243 RIN3-211ENST00000557762 517 ntTSL 3 BASIC20.64■□□□□ 0.89
MBD4O95243 MIR4751-201ENST00000578027 74 ntBASIC20.64■□□□□ 0.89
MBD4O95243 TERC-201ENST00000602385 541 ntBASIC20.64■□□□□ 0.89
MBD4O95243 AC027601.4-201ENST00000611259 610 ntBASIC20.64■□□□□ 0.89
MBD4O95243 AC004790.2-201ENST00000623588 572 ntBASIC20.64■□□□□ 0.89
MBD4O95243 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
MBD4O95243 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
MBD4O95243 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
MBD4O95243 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
MBD4O95243 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC20.64■□□□□ 0.89
MBD4O95243 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
MBD4O95243 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MBD4O95243 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
MBD4O95243 PI4KAP1-204ENST00000612579 1703 ntBASIC20.64■□□□□ 0.89
MBD4O95243 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MBD4O95243 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MBD4O95243 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC20.63■□□□□ 0.89
MBD4O95243 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MBD4O95243 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.63■□□□□ 0.89
MBD4O95243 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MBD4O95243 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MBD4O95243 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MBD4O95243 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MBD4O95243 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
MBD4O95243 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.63■□□□□ 0.89
MBD4O95243 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms