Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 AL356309.3-201ENST00000624132 1934 ntBASIC16.01■□□□□ 0.15
NKX2-2O95096 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
NKX2-2O95096 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.01■□□□□ 0.15
NKX2-2O95096 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
NKX2-2O95096 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
NKX2-2O95096 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.01■□□□□ 0.15
NKX2-2O95096 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.01■□□□□ 0.15
NKX2-2O95096 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 PAN3-AS1-201ENST00000563843 1351 ntBASIC16■□□□□ 0.15
NKX2-2O95096 AC106820.2-201ENST00000563775 3264 ntBASIC16■□□□□ 0.15
NKX2-2O95096 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 AC097637.2-201ENST00000624096 1997 ntBASIC16■□□□□ 0.15
NKX2-2O95096 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
NKX2-2O95096 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16■□□□□ 0.15
NKX2-2O95096 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16■□□□□ 0.15
NKX2-2O95096 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16■□□□□ 0.15
NKX2-2O95096 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16■□□□□ 0.15
NKX2-2O95096 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16■□□□□ 0.15
NKX2-2O95096 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
NKX2-2O95096 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 AKR1C7P-201ENST00000305623 895 ntBASIC16■□□□□ 0.15
NKX2-2O95096 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16■□□□□ 0.15
NKX2-2O95096 FGFR3P6-201ENST00000457012 610 ntBASIC16■□□□□ 0.15
NKX2-2O95096 BX005266.1-201ENST00000473402 457 ntBASIC16■□□□□ 0.15
NKX2-2O95096 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16■□□□□ 0.15
NKX2-2O95096 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16■□□□□ 0.15
NKX2-2O95096 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 LINC01711-201ENST00000598340 967 ntBASIC16■□□□□ 0.15
NKX2-2O95096 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 AL022326.1-202ENST00000641533 845 ntBASIC16■□□□□ 0.15
NKX2-2O95096 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
NKX2-2O95096 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
NKX2-2O95096 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16■□□□□ 0.15
NKX2-2O95096 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NKX2-2O95096 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
NKX2-2O95096 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX2-2O95096 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX2-2O95096 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC15.99■□□□□ 0.15
NKX2-2O95096 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
NKX2-2O95096 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX2-2O95096 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX2-2O95096 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
NKX2-2O95096 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
NKX2-2O95096 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.99■□□□□ 0.15
NKX2-2O95096 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX2-2O95096 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX2-2O95096 LINC00982-205ENST00000420957 435 ntBASIC15.99■□□□□ 0.15
NKX2-2O95096 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15.99■□□□□ 0.15
NKX2-2O95096 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
NKX2-2O95096 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.99■□□□□ 0.15
NKX2-2O95096 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC15.99■□□□□ 0.15
NKX2-2O95096 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC15.99■□□□□ 0.15
NKX2-2O95096 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
NKX2-2O95096 AC008608.2-201ENST00000606089 416 ntBASIC15.99■□□□□ 0.15
NKX2-2O95096 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.99■□□□□ 0.15
NKX2-2O95096 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX2-2O95096 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
NKX2-2O95096 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
NKX2-2O95096 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
NKX2-2O95096 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX2-2O95096 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
NKX2-2O95096 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX2-2O95096 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
NKX2-2O95096 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX2-2O95096 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX2-2O95096 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
NKX2-2O95096 PRORSD1P-202ENST00000563365 2154 ntBASIC15.99■□□□□ 0.15
NKX2-2O95096 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
NKX2-2O95096 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
NKX2-2O95096 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
NKX2-2O95096 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
NKX2-2O95096 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
NKX2-2O95096 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC15.98■□□□□ 0.15
NKX2-2O95096 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC15.98■□□□□ 0.15
NKX2-2O95096 GPR89P-201ENST00000407924 1495 ntBASIC15.98■□□□□ 0.15
NKX2-2O95096 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms