Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
LDB2O43679 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.35■□□□□ 0.37
LDB2O43679 RBM17P3-201ENST00000417687 1192 ntBASIC17.35■□□□□ 0.37
LDB2O43679 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.35■□□□□ 0.37
LDB2O43679 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
LDB2O43679 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.35■□□□□ 0.37
LDB2O43679 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
LDB2O43679 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
LDB2O43679 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.35■□□□□ 0.37
LDB2O43679 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.35■□□□□ 0.37
LDB2O43679 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 AC092053.1-201ENST00000605787 1936 ntBASIC17.35■□□□□ 0.37
LDB2O43679 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 AC060834.1-201ENST00000443027 2032 ntBASIC17.35■□□□□ 0.37
LDB2O43679 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.35■□□□□ 0.37
LDB2O43679 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.35■□□□□ 0.37
LDB2O43679 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB2O43679 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LDB2O43679 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB2O43679 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
LDB2O43679 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LDB2O43679 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
LDB2O43679 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB2O43679 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB2O43679 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB2O43679 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.34■□□□□ 0.37
LDB2O43679 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB2O43679 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.34■□□□□ 0.37
LDB2O43679 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB2O43679 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB2O43679 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LDB2O43679 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LDB2O43679 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.34■□□□□ 0.37
LDB2O43679 EGFEM1P-202ENST00000431685 1563 ntBASIC17.34■□□□□ 0.37
LDB2O43679 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.34■□□□□ 0.37
LDB2O43679 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LDB2O43679 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LDB2O43679 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.34■□□□□ 0.37
LDB2O43679 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.34■□□□□ 0.37
LDB2O43679 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.34■□□□□ 0.37
LDB2O43679 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.34■□□□□ 0.37
LDB2O43679 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
LDB2O43679 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LDB2O43679 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB2O43679 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB2O43679 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB2O43679 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB2O43679 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LDB2O43679 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.33■□□□□ 0.37
LDB2O43679 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.33■□□□□ 0.37
LDB2O43679 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
LDB2O43679 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
LDB2O43679 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LDB2O43679 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.33■□□□□ 0.37
LDB2O43679 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LDB2O43679 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LDB2O43679 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB2O43679 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LDB2O43679 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB2O43679 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB2O43679 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB2O43679 AKR1C7P-201ENST00000305623 895 ntBASIC17.33■□□□□ 0.36
LDB2O43679 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LDB2O43679 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LDB2O43679 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.33■□□□□ 0.36
LDB2O43679 PRYP5-201ENST00000451909 266 ntBASIC17.33■□□□□ 0.36
LDB2O43679 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.33■□□□□ 0.36
LDB2O43679 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.33■□□□□ 0.36
LDB2O43679 REXO1L6P-202ENST00000619970 1078 ntBASIC17.33■□□□□ 0.36
LDB2O43679 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.33■□□□□ 0.36
LDB2O43679 AL355877.3-201ENST00000622820 899 ntBASIC17.33■□□□□ 0.36
LDB2O43679 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LDB2O43679 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB2O43679 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB2O43679 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.33■□□□□ 0.36
LDB2O43679 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB2O43679 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB2O43679 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LDB2O43679 PCDHA12-202ENST00000613593 2588 ntBASIC17.33■□□□□ 0.36
LDB2O43679 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB2O43679 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms