Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NPHP1O15259 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC21.83■■□□□ 1.09
NPHP1O15259 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC21.83■■□□□ 1.09
NPHP1O15259 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NPHP1O15259 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
NPHP1O15259 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
NPHP1O15259 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
NPHP1O15259 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
NPHP1O15259 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
NPHP1O15259 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
NPHP1O15259 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
NPHP1O15259 AC007613.1-201ENST00000572811 2597 ntBASIC21.83■■□□□ 1.08
NPHP1O15259 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP1O15259 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC21.82■■□□□ 1.08
NPHP1O15259 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC21.82■■□□□ 1.08
NPHP1O15259 LETM1P2-201ENST00000597330 2178 ntBASIC21.82■■□□□ 1.08
NPHP1O15259 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP1O15259 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
NPHP1O15259 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP1O15259 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC21.82■■□□□ 1.08
NPHP1O15259 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC21.82■■□□□ 1.08
NPHP1O15259 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC21.82■■□□□ 1.08
NPHP1O15259 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC21.82■■□□□ 1.08
NPHP1O15259 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP1O15259 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP1O15259 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP1O15259 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP1O15259 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP1O15259 DDX43P3-201ENST00000441064 443 ntBASIC21.82■■□□□ 1.08
NPHP1O15259 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC21.82■■□□□ 1.08
NPHP1O15259 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC21.82■■□□□ 1.08
NPHP1O15259 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC21.82■■□□□ 1.08
NPHP1O15259 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC21.82■■□□□ 1.08
NPHP1O15259 METTL23-205ENST00000588302 925 ntTSL 5 BASIC21.82■■□□□ 1.08
NPHP1O15259 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC21.82■■□□□ 1.08
NPHP1O15259 CITED2-204ENST00000618718 901 ntTSL 2 BASIC21.82■■□□□ 1.08
NPHP1O15259 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP1O15259 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP1O15259 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP1O15259 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP1O15259 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC21.82■■□□□ 1.08
NPHP1O15259 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP1O15259 FZD10-202ENST00000539839 3282 ntBASIC21.82■■□□□ 1.08
NPHP1O15259 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
NPHP1O15259 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC21.82■■□□□ 1.08
NPHP1O15259 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
NPHP1O15259 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP1O15259 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.81■■□□□ 1.08
NPHP1O15259 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP1O15259 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP1O15259 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP1O15259 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.81■■□□□ 1.08
NPHP1O15259 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC21.81■■□□□ 1.08
NPHP1O15259 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
NPHP1O15259 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP1O15259 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP1O15259 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
NPHP1O15259 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
NPHP1O15259 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP1O15259 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
NPHP1O15259 MYCLP1-201ENST00000372451 1075 ntBASIC21.81■■□□□ 1.08
NPHP1O15259 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP1O15259 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC21.81■■□□□ 1.08
NPHP1O15259 CXCL1P1-201ENST00000502804 216 ntBASIC21.81■■□□□ 1.08
NPHP1O15259 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP1O15259 OR7E47P-204ENST00000575924 449 ntBASIC21.81■■□□□ 1.08
NPHP1O15259 CYB561-216ENST00000582297 897 ntTSL 3 BASIC21.81■■□□□ 1.08
NPHP1O15259 AC068137.2-201ENST00000605408 478 ntBASIC21.81■■□□□ 1.08
NPHP1O15259 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP1O15259 AC093512.1-201ENST00000617969 520 ntBASIC21.81■■□□□ 1.08
NPHP1O15259 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC21.81■■□□□ 1.08
NPHP1O15259 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP1O15259 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
NPHP1O15259 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC21.81■■□□□ 1.08
NPHP1O15259 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP1O15259 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
NPHP1O15259 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
NPHP1O15259 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
NPHP1O15259 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP1O15259 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP1O15259 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP1O15259 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP1O15259 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP1O15259 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP1O15259 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP1O15259 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
NPHP1O15259 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
NPHP1O15259 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP1O15259 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP1O15259 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.8■■□□□ 1.08
NPHP1O15259 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
NPHP1O15259 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP1O15259 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP1O15259 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC21.8■■□□□ 1.08
NPHP1O15259 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP1O15259 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
NPHP1O15259 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
NPHP1O15259 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP1O15259 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP1O15259 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms