Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.65■□□□□ 0.58
CNTN3Q9P232 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.65■□□□□ 0.58
CNTN3Q9P232 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.65■□□□□ 0.58
CNTN3Q9P232 AC064836.3-201ENST00000607928 673 ntBASIC18.65■□□□□ 0.58
CNTN3Q9P232 GGTLC5P-201ENST00000617623 998 ntBASIC18.65■□□□□ 0.58
CNTN3Q9P232 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CNTN3Q9P232 AC004790.2-201ENST00000623588 572 ntBASIC18.65■□□□□ 0.58
CNTN3Q9P232 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.65■□□□□ 0.58
CNTN3Q9P232 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CNTN3Q9P232 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.65■□□□□ 0.58
CNTN3Q9P232 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CNTN3Q9P232 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CNTN3Q9P232 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CNTN3Q9P232 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CNTN3Q9P232 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.64■□□□□ 0.58
CNTN3Q9P232 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.64■□□□□ 0.57
CNTN3Q9P232 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CNTN3Q9P232 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.64■□□□□ 0.57
CNTN3Q9P232 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CNTN3Q9P232 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CNTN3Q9P232 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.64■□□□□ 0.57
CNTN3Q9P232 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CNTN3Q9P232 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CNTN3Q9P232 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CNTN3Q9P232 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.64■□□□□ 0.57
CNTN3Q9P232 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.64■□□□□ 0.57
CNTN3Q9P232 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.64■□□□□ 0.57
CNTN3Q9P232 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.64■□□□□ 0.57
CNTN3Q9P232 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.64■□□□□ 0.57
CNTN3Q9P232 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.64■□□□□ 0.57
CNTN3Q9P232 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.64■□□□□ 0.57
CNTN3Q9P232 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CNTN3Q9P232 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CNTN3Q9P232 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.64■□□□□ 0.57
CNTN3Q9P232 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CNTN3Q9P232 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CNTN3Q9P232 AC020763.4-201ENST00000623414 4170 ntBASIC18.64■□□□□ 0.57
CNTN3Q9P232 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CNTN3Q9P232 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CNTN3Q9P232 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CNTN3Q9P232 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CNTN3Q9P232 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CNTN3Q9P232 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CNTN3Q9P232 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CNTN3Q9P232 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.63■□□□□ 0.57
CNTN3Q9P232 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.63■□□□□ 0.57
CNTN3Q9P232 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.63■□□□□ 0.57
CNTN3Q9P232 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CNTN3Q9P232 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
CNTN3Q9P232 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CNTN3Q9P232 VN2R19P-201ENST00000442399 1052 ntBASIC18.63■□□□□ 0.57
CNTN3Q9P232 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.63■□□□□ 0.57
CNTN3Q9P232 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.63■□□□□ 0.57
CNTN3Q9P232 RNA5SP416-201ENST00000516838 111 ntBASIC18.63■□□□□ 0.57
CNTN3Q9P232 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.63■□□□□ 0.57
CNTN3Q9P232 MIR4751-201ENST00000578027 74 ntBASIC18.63■□□□□ 0.57
CNTN3Q9P232 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.63■□□□□ 0.57
CNTN3Q9P232 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.63■□□□□ 0.57
CNTN3Q9P232 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CNTN3Q9P232 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.63■□□□□ 0.57
CNTN3Q9P232 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CNTN3Q9P232 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CNTN3Q9P232 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.63■□□□□ 0.57
CNTN3Q9P232 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CNTN3Q9P232 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CNTN3Q9P232 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CNTN3Q9P232 AL138688.1-201ENST00000624851 1594 ntBASIC18.63■□□□□ 0.57
CNTN3Q9P232 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CNTN3Q9P232 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CNTN3Q9P232 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CNTN3Q9P232 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CNTN3Q9P232 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CNTN3Q9P232 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CNTN3Q9P232 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CNTN3Q9P232 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CNTN3Q9P232 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.62■□□□□ 0.57
CNTN3Q9P232 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CNTN3Q9P232 MRPL20P1-201ENST00000400819 433 ntBASIC18.62■□□□□ 0.57
CNTN3Q9P232 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.62■□□□□ 0.57
CNTN3Q9P232 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CNTN3Q9P232 HCG4B-203ENST00000450128 991 ntBASIC18.62■□□□□ 0.57
CNTN3Q9P232 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.62■□□□□ 0.57
CNTN3Q9P232 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
CNTN3Q9P232 AC010654.1-201ENST00000615722 808 ntBASIC18.62■□□□□ 0.57
CNTN3Q9P232 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.62■□□□□ 0.57
CNTN3Q9P232 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CNTN3Q9P232 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CNTN3Q9P232 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CNTN3Q9P232 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.62■□□□□ 0.57
CNTN3Q9P232 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CNTN3Q9P232 PI4KAP1-204ENST00000612579 1703 ntBASIC18.62■□□□□ 0.57
CNTN3Q9P232 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CNTN3Q9P232 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms