Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 AC018712.1-201ENST00000455767 687 ntBASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM39Q9HCM9 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 AC148477.5-201ENST00000625164 1645 ntBASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 RPS2P28-201ENST00000314255 741 ntBASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 AL773604.1-201ENST00000617417 272 ntBASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM39Q9HCM9 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 AC025062.2-201ENST00000605477 670 ntBASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 AC148477.8-201ENST00000624298 468 ntBASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TRIM39Q9HCM9 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms