Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 AC087163.2-201ENST00000457299 853 ntBASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 CXCL1P1-201ENST00000502804 216 ntBASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 AP006288.1-201ENST00000446065 395 ntBASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 ACTL9-202ENST00000612068 1252 ntBASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PAAF1Q9BRP4 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 AL031432.2-201ENST00000566714 459 ntBASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 AL928711.1-201ENST00000570165 459 ntBASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 AC134043.2-201ENST00000624206 2238 ntBASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
PAAF1Q9BRP4 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 FAM185BP-201ENST00000443595 716 ntBASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 AC023141.13-201ENST00000604991 943 ntBASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms