Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 RNA5SP419-201ENST00000515908 135 ntBASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 AC021087.4-201ENST00000563761 564 ntBASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 AL139288.1-201ENST00000623748 933 ntBASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 AC122714.2-201ENST00000502787 707 ntBASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 AC139887.3-201ENST00000568585 713 ntBASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 AC116407.2-201ENST00000613639 860 ntBASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.8■□□□□ 0.28
CLIP3Q96DZ5 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLIP3Q96DZ5 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms