Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 FZD10-202ENST00000539839 3282 ntBASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 AC079781.3-201ENST00000449110 356 ntBASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 AC139887.3-201ENST00000568585 713 ntBASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 AC104692.2-201ENST00000603054 253 ntBASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 AL139424.1-201ENST00000607572 797 ntBASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 AL590787.1-201ENST00000568856 1315 ntBASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 GPR89P-201ENST00000407924 1495 ntBASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CTHRC1Q96CG8 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 AC018712.1-201ENST00000455767 687 ntBASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 AC004706.3-202ENST00000621574 984 ntBASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 AC107918.4-202ENST00000641623 219 ntBASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 AC092053.1-201ENST00000605787 1936 ntBASIC16.06■□□□□ 0.16
CTHRC1Q96CG8 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.05■□□□□ 0.16
CTHRC1Q96CG8 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTHRC1Q96CG8 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CTHRC1Q96CG8 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTHRC1Q96CG8 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CTHRC1Q96CG8 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.05■□□□□ 0.16
CTHRC1Q96CG8 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.05■□□□□ 0.16
CTHRC1Q96CG8 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.05■□□□□ 0.16
CTHRC1Q96CG8 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
CTHRC1Q96CG8 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
CTHRC1Q96CG8 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CTHRC1Q96CG8 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CTHRC1Q96CG8 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTHRC1Q96CG8 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
CTHRC1Q96CG8 LAGE3P1-201ENST00000425356 484 ntBASIC16.05■□□□□ 0.16
CTHRC1Q96CG8 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms