Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 AL353719.1-201ENST00000566847 864 ntBASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 REXO1L11P-201ENST00000620964 1927 ntBASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
ZNF540Q8NDQ6 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
ZNF540Q8NDQ6 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.14■□□□□ 0.18
ZNF540Q8NDQ6 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.14■□□□□ 0.18
ZNF540Q8NDQ6 AC005915.1-201ENST00000624912 2018 ntBASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 RNF152P1-201ENST00000397754 604 ntBASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 AC007663.1-201ENST00000438948 1240 ntBASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 AC009065.1-201ENST00000564055 1225 ntBASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF540Q8NDQ6 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 AC092338.2-201ENST00000568827 1415 ntBASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 HOXB1-202ENST00000577092 1414 ntBASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 AC116407.2-201ENST00000613639 860 ntBASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ZNF540Q8NDQ6 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms