Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AC021087.4-201ENST00000563761 564 ntBASIC16.98■□□□□ 0.31
VRK3Q8IV63 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.98■□□□□ 0.31
VRK3Q8IV63 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VRK3Q8IV63 AC064862.7-201ENST00000604520 867 ntBASIC16.98■□□□□ 0.31
VRK3Q8IV63 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.98■□□□□ 0.31
VRK3Q8IV63 AL031008.1-201ENST00000619963 541 ntBASIC16.98■□□□□ 0.31
VRK3Q8IV63 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VRK3Q8IV63 AC093525.9-201ENST00000624961 1746 ntBASIC16.98■□□□□ 0.31
VRK3Q8IV63 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VRK3Q8IV63 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.98■□□□□ 0.31
VRK3Q8IV63 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VRK3Q8IV63 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
VRK3Q8IV63 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VRK3Q8IV63 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VRK3Q8IV63 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VRK3Q8IV63 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VRK3Q8IV63 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VRK3Q8IV63 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
VRK3Q8IV63 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VRK3Q8IV63 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VRK3Q8IV63 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VRK3Q8IV63 PRYP5-201ENST00000451909 266 ntBASIC16.97■□□□□ 0.31
VRK3Q8IV63 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 MTDHP4-201ENST00000600287 670 ntBASIC16.97■□□□□ 0.31
VRK3Q8IV63 AL121912.1-201ENST00000603683 238 ntBASIC16.97■□□□□ 0.31
VRK3Q8IV63 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 AL022326.1-202ENST00000641533 845 ntBASIC16.97■□□□□ 0.31
VRK3Q8IV63 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
VRK3Q8IV63 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VRK3Q8IV63 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VRK3Q8IV63 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VRK3Q8IV63 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VRK3Q8IV63 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VRK3Q8IV63 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VRK3Q8IV63 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.97■□□□□ 0.31
VRK3Q8IV63 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VRK3Q8IV63 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VRK3Q8IV63 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
VRK3Q8IV63 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.96■□□□□ 0.31
VRK3Q8IV63 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VRK3Q8IV63 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
VRK3Q8IV63 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.96■□□□□ 0.31
VRK3Q8IV63 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
VRK3Q8IV63 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VRK3Q8IV63 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.96■□□□□ 0.31
VRK3Q8IV63 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
VRK3Q8IV63 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
VRK3Q8IV63 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.96■□□□□ 0.31
VRK3Q8IV63 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.96■□□□□ 0.31
VRK3Q8IV63 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.96■□□□□ 0.31
VRK3Q8IV63 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.96■□□□□ 0.31
VRK3Q8IV63 AC025062.2-201ENST00000605477 670 ntBASIC16.96■□□□□ 0.31
VRK3Q8IV63 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.96■□□□□ 0.31
VRK3Q8IV63 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VRK3Q8IV63 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.96■□□□□ 0.31
VRK3Q8IV63 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VRK3Q8IV63 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.96■□□□□ 0.31
VRK3Q8IV63 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VRK3Q8IV63 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VRK3Q8IV63 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VRK3Q8IV63 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
VRK3Q8IV63 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VRK3Q8IV63 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VRK3Q8IV63 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VRK3Q8IV63 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.96■□□□□ 0.3
VRK3Q8IV63 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
VRK3Q8IV63 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
VRK3Q8IV63 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.96■□□□□ 0.3
VRK3Q8IV63 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.96■□□□□ 0.3
VRK3Q8IV63 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VRK3Q8IV63 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.96■□□□□ 0.3
VRK3Q8IV63 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VRK3Q8IV63 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.95■□□□□ 0.3
VRK3Q8IV63 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VRK3Q8IV63 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VRK3Q8IV63 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VRK3Q8IV63 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VRK3Q8IV63 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VRK3Q8IV63 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VRK3Q8IV63 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.95■□□□□ 0.3
VRK3Q8IV63 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.95■□□□□ 0.3
VRK3Q8IV63 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VRK3Q8IV63 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VRK3Q8IV63 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VRK3Q8IV63 AC004870.1-201ENST00000315132 882 ntBASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms