Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.77■□□□□ 0.59
KRT39Q6A163 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
KRT39Q6A163 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
KRT39Q6A163 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
KRT39Q6A163 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
KRT39Q6A163 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.76■□□□□ 0.59
KRT39Q6A163 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
KRT39Q6A163 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
KRT39Q6A163 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.76■□□□□ 0.59
KRT39Q6A163 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
KRT39Q6A163 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
KRT39Q6A163 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.76■□□□□ 0.59
KRT39Q6A163 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
KRT39Q6A163 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
KRT39Q6A163 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.76■□□□□ 0.59
KRT39Q6A163 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.76■□□□□ 0.59
KRT39Q6A163 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.76■□□□□ 0.59
KRT39Q6A163 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.76■□□□□ 0.59
KRT39Q6A163 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.76■□□□□ 0.59
KRT39Q6A163 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.76■□□□□ 0.59
KRT39Q6A163 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.76■□□□□ 0.59
KRT39Q6A163 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
KRT39Q6A163 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
KRT39Q6A163 REXO1L6P-202ENST00000619970 1078 ntBASIC18.76■□□□□ 0.59
KRT39Q6A163 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
KRT39Q6A163 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
KRT39Q6A163 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
KRT39Q6A163 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
KRT39Q6A163 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
KRT39Q6A163 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
KRT39Q6A163 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
KRT39Q6A163 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
KRT39Q6A163 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
KRT39Q6A163 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
KRT39Q6A163 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.75■□□□□ 0.59
KRT39Q6A163 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.75■□□□□ 0.59
KRT39Q6A163 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
KRT39Q6A163 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.75■□□□□ 0.59
KRT39Q6A163 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.75■□□□□ 0.59
KRT39Q6A163 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.75■□□□□ 0.59
KRT39Q6A163 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.75■□□□□ 0.59
KRT39Q6A163 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.75■□□□□ 0.59
KRT39Q6A163 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.75■□□□□ 0.59
KRT39Q6A163 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
KRT39Q6A163 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.75■□□□□ 0.59
KRT39Q6A163 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.75■□□□□ 0.59
KRT39Q6A163 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.75■□□□□ 0.59
KRT39Q6A163 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.75■□□□□ 0.59
KRT39Q6A163 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC18.75■□□□□ 0.59
KRT39Q6A163 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.75■□□□□ 0.59
KRT39Q6A163 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
KRT39Q6A163 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
KRT39Q6A163 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
KRT39Q6A163 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
KRT39Q6A163 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
KRT39Q6A163 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.74■□□□□ 0.59
KRT39Q6A163 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
KRT39Q6A163 MTDHP3-201ENST00000594186 672 ntBASIC18.74■□□□□ 0.59
KRT39Q6A163 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.74■□□□□ 0.59
KRT39Q6A163 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.74■□□□□ 0.59
KRT39Q6A163 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 AL355877.3-201ENST00000622820 899 ntBASIC18.74■□□□□ 0.59
KRT39Q6A163 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.74■□□□□ 0.59
KRT39Q6A163 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.74■□□□□ 0.59
KRT39Q6A163 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
KRT39Q6A163 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms