Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 PHB2-202ENST00000440277 996 ntTSL 5 BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 AP003041.3-201ENST00000527151 707 ntBASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 KRT18P58-201ENST00000527480 1120 ntBASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 AC008687.5-201ENST00000593746 558 ntBASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 AC112497.1-201ENST00000624824 639 ntBASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC14.46□□□□□ -0.09
PDLIM3Q53GG5 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
PDLIM3Q53GG5 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC14.46□□□□□ -0.1
PDLIM3Q53GG5 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
PDLIM3Q53GG5 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.1
PDLIM3Q53GG5 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
PDLIM3Q53GG5 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
PDLIM3Q53GG5 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
PDLIM3Q53GG5 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
PDLIM3Q53GG5 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC14.46□□□□□ -0.1
PDLIM3Q53GG5 AC132938.6-201ENST00000623828 1655 ntBASIC14.46□□□□□ -0.1
PDLIM3Q53GG5 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 AL355312.1-201ENST00000407115 2176 ntBASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 BX842568.4-201ENST00000421222 227 ntBASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 LINC00602-201ENST00000629776 2065 ntBASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms