Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 MTCL1P1-201ENST00000446207 792 ntBASIC16.7■□□□□ 0.26
COL28A1Q2UY09 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 AC113404.2-201ENST00000507884 177 ntBASIC16.7■□□□□ 0.26
COL28A1Q2UY09 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 AC087641.1-201ENST00000557561 1021 ntBASIC16.7■□□□□ 0.26
COL28A1Q2UY09 MIR4751-201ENST00000578027 74 ntBASIC16.7■□□□□ 0.26
COL28A1Q2UY09 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 AC139713.2-201ENST00000641328 2723 ntBASIC16.7■□□□□ 0.26
COL28A1Q2UY09 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 ESPNP-201ENST00000270691 2015 ntBASIC16.7■□□□□ 0.26
COL28A1Q2UY09 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.7■□□□□ 0.26
COL28A1Q2UY09 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 RNA5SP421-201ENST00000516864 134 ntBASIC16.69■□□□□ 0.26
COL28A1Q2UY09 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 AL022326.1-202ENST00000641533 845 ntBASIC16.69■□□□□ 0.26
COL28A1Q2UY09 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 HTR7P1-202ENST00000624664 4411 ntBASIC16.69■□□□□ 0.26
COL28A1Q2UY09 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.69■□□□□ 0.26
COL28A1Q2UY09 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL28A1Q2UY09 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
COL28A1Q2UY09 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms