Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC233702.3-201ENST00000578656 1387 ntBASIC16.38■□□□□ 0.21
RFX3P48380 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.37■□□□□ 0.21
RFX3P48380 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
RFX3P48380 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.37■□□□□ 0.21
RFX3P48380 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
RFX3P48380 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.37■□□□□ 0.21
RFX3P48380 PP12613-201ENST00000424958 2230 ntBASIC16.37■□□□□ 0.21
RFX3P48380 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.37■□□□□ 0.21
RFX3P48380 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
RFX3P48380 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.37■□□□□ 0.21
RFX3P48380 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 AC074051.2-201ENST00000565115 352 ntBASIC16.37■□□□□ 0.21
RFX3P48380 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.37■□□□□ 0.21
RFX3P48380 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.37■□□□□ 0.21
RFX3P48380 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
RFX3P48380 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 LINC00304-203ENST00000565008 1864 ntBASIC16.37■□□□□ 0.21
RFX3P48380 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
RFX3P48380 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.37■□□□□ 0.21
RFX3P48380 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
RFX3P48380 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX3P48380 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.36■□□□□ 0.21
RFX3P48380 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
RFX3P48380 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFX3P48380 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFX3P48380 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFX3P48380 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.36■□□□□ 0.21
RFX3P48380 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFX3P48380 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.36■□□□□ 0.21
RFX3P48380 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
RFX3P48380 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RFX3P48380 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.36■□□□□ 0.21
RFX3P48380 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
RFX3P48380 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.36■□□□□ 0.21
RFX3P48380 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.36■□□□□ 0.21
RFX3P48380 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.36■□□□□ 0.21
RFX3P48380 AP005901.3-202ENST00000581653 237 ntBASIC16.36■□□□□ 0.21
RFX3P48380 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.36■□□□□ 0.21
RFX3P48380 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.36■□□□□ 0.21
RFX3P48380 AC092329.2-201ENST00000598402 547 ntBASIC16.36■□□□□ 0.21
RFX3P48380 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
RFX3P48380 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFX3P48380 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.36■□□□□ 0.21
RFX3P48380 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
RFX3P48380 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.36■□□□□ 0.21
RFX3P48380 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RFX3P48380 AC133963.1-201ENST00000504166 1679 ntBASIC16.36■□□□□ 0.21
RFX3P48380 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFX3P48380 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RFX3P48380 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFX3P48380 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RFX3P48380 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
RFX3P48380 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.35■□□□□ 0.21
RFX3P48380 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
RFX3P48380 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.35■□□□□ 0.21
RFX3P48380 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
RFX3P48380 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.35■□□□□ 0.21
RFX3P48380 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
RFX3P48380 AC007967.3-201ENST00000434308 558 ntBASIC16.35■□□□□ 0.21
RFX3P48380 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 DRAXINP1-201ENST00000437611 948 ntBASIC16.35■□□□□ 0.21
RFX3P48380 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.35■□□□□ 0.21
RFX3P48380 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.35■□□□□ 0.21
RFX3P48380 AC096582.2-201ENST00000510860 516 ntBASIC16.35■□□□□ 0.21
RFX3P48380 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.35■□□□□ 0.21
RFX3P48380 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.35■□□□□ 0.21
RFX3P48380 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.35■□□□□ 0.21
RFX3P48380 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.35■□□□□ 0.21
RFX3P48380 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.35■□□□□ 0.21
RFX3P48380 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.35■□□□□ 0.21
RFX3P48380 AC125634.1-201ENST00000438758 1403 ntBASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms