Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.43■□□□□ 0.86
NEDD4P46934 AC016396.2-201ENST00000562575 1417 ntBASIC20.43■□□□□ 0.86
NEDD4P46934 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.43■□□□□ 0.86
NEDD4P46934 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NEDD4P46934 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NEDD4P46934 CSF3-203ENST00000394148 622 ntTSL 3 BASIC20.43■□□□□ 0.86
NEDD4P46934 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC20.43■□□□□ 0.86
NEDD4P46934 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC20.43■□□□□ 0.86
NEDD4P46934 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC20.43■□□□□ 0.86
NEDD4P46934 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC20.43■□□□□ 0.86
NEDD4P46934 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC20.43■□□□□ 0.86
NEDD4P46934 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.43■□□□□ 0.86
NEDD4P46934 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.43■□□□□ 0.86
NEDD4P46934 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NEDD4P46934 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NEDD4P46934 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.43■□□□□ 0.86
NEDD4P46934 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NEDD4P46934 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.43■□□□□ 0.86
NEDD4P46934 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC20.43■□□□□ 0.86
NEDD4P46934 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
NEDD4P46934 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.43■□□□□ 0.86
NEDD4P46934 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.43■□□□□ 0.86
NEDD4P46934 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NEDD4P46934 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NEDD4P46934 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NEDD4P46934 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
NEDD4P46934 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NEDD4P46934 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
NEDD4P46934 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NEDD4P46934 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NEDD4P46934 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NEDD4P46934 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
NEDD4P46934 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.42■□□□□ 0.86
NEDD4P46934 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
NEDD4P46934 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC20.42■□□□□ 0.86
NEDD4P46934 AC079776.4-201ENST00000511039 504 ntBASIC20.42■□□□□ 0.86
NEDD4P46934 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.42■□□□□ 0.86
NEDD4P46934 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC20.42■□□□□ 0.86
NEDD4P46934 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.42■□□□□ 0.86
NEDD4P46934 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC20.42■□□□□ 0.86
NEDD4P46934 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NEDD4P46934 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
NEDD4P46934 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NEDD4P46934 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.42■□□□□ 0.86
NEDD4P46934 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.42■□□□□ 0.86
NEDD4P46934 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
NEDD4P46934 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
NEDD4P46934 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NEDD4P46934 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NEDD4P46934 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NEDD4P46934 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NEDD4P46934 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NEDD4P46934 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
NEDD4P46934 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
NEDD4P46934 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NEDD4P46934 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NEDD4P46934 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
NEDD4P46934 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
NEDD4P46934 AC093525.9-201ENST00000624961 1746 ntBASIC20.41■□□□□ 0.86
NEDD4P46934 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
NEDD4P46934 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NEDD4P46934 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.41■□□□□ 0.86
NEDD4P46934 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NEDD4P46934 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
NEDD4P46934 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NEDD4P46934 ARTN-206ENST00000472435 402 ntTSL 3 BASIC20.41■□□□□ 0.86
NEDD4P46934 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.41■□□□□ 0.86
NEDD4P46934 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.41■□□□□ 0.86
NEDD4P46934 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC20.41■□□□□ 0.86
NEDD4P46934 PRKN-208ENST00000610470 531 ntTSL 2 BASIC20.41■□□□□ 0.86
NEDD4P46934 PRKN-209ENST00000612485 225 ntTSL 5 BASIC20.41■□□□□ 0.86
NEDD4P46934 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
NEDD4P46934 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.41■□□□□ 0.86
NEDD4P46934 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
NEDD4P46934 AL590787.1-201ENST00000568856 1315 ntBASIC20.41■□□□□ 0.86
NEDD4P46934 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
NEDD4P46934 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NEDD4P46934 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
NEDD4P46934 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
NEDD4P46934 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
NEDD4P46934 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.41■□□□□ 0.86
NEDD4P46934 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
NEDD4P46934 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
NEDD4P46934 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NEDD4P46934 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NEDD4P46934 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NEDD4P46934 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
NEDD4P46934 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
NEDD4P46934 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
NEDD4P46934 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
NEDD4P46934 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.4■□□□□ 0.86
NEDD4P46934 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NEDD4P46934 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.4■□□□□ 0.86
NEDD4P46934 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NEDD4P46934 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
NEDD4P46934 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NEDD4P46934 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NEDD4P46934 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NEDD4P46934 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC20.4■□□□□ 0.86
NEDD4P46934 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms