Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
HNF4AP41235 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
HNF4AP41235 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HNF4AP41235 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HNF4AP41235 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
HNF4AP41235 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
HNF4AP41235 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HNF4AP41235 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
HNF4AP41235 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
HNF4AP41235 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HNF4AP41235 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
HNF4AP41235 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HNF4AP41235 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.88■□□□□ 0.29
HNF4AP41235 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HNF4AP41235 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
HNF4AP41235 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.88■□□□□ 0.29
HNF4AP41235 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HNF4AP41235 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.88■□□□□ 0.29
HNF4AP41235 MIR3652-201ENST00000579335 131 ntBASIC16.88■□□□□ 0.29
HNF4AP41235 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.88■□□□□ 0.29
HNF4AP41235 AC011467.2-201ENST00000598425 242 ntBASIC16.88■□□□□ 0.29
HNF4AP41235 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.88■□□□□ 0.29
HNF4AP41235 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HNF4AP41235 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HNF4AP41235 AL049757.1-201ENST00000616842 1596 ntBASIC16.88■□□□□ 0.29
HNF4AP41235 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HNF4AP41235 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
HNF4AP41235 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
HNF4AP41235 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HNF4AP41235 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HNF4AP41235 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
HNF4AP41235 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
HNF4AP41235 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HNF4AP41235 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HNF4AP41235 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.87■□□□□ 0.29
HNF4AP41235 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.87■□□□□ 0.29
HNF4AP41235 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.87■□□□□ 0.29
HNF4AP41235 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.87■□□□□ 0.29
HNF4AP41235 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 TP73-AS1-210ENST00000637775 1455 ntBASIC16.87■□□□□ 0.29
HNF4AP41235 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 TNRC18P3-201ENST00000441896 2691 ntBASIC16.87■□□□□ 0.29
HNF4AP41235 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.87■□□□□ 0.29
HNF4AP41235 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
HNF4AP41235 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.87■□□□□ 0.29
HNF4AP41235 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.87■□□□□ 0.29
HNF4AP41235 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.87■□□□□ 0.29
HNF4AP41235 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 NUS1P2-201ENST00000417358 873 ntBASIC16.87■□□□□ 0.29
HNF4AP41235 FOSL1P1-201ENST00000511041 816 ntBASIC16.87■□□□□ 0.29
HNF4AP41235 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
HNF4AP41235 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.87■□□□□ 0.29
HNF4AP41235 BNIP3P18-201ENST00000593976 575 ntBASIC16.87■□□□□ 0.29
HNF4AP41235 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.87■□□□□ 0.29
HNF4AP41235 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.87■□□□□ 0.29
HNF4AP41235 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.87■□□□□ 0.29
HNF4AP41235 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.87■□□□□ 0.29
HNF4AP41235 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HNF4AP41235 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
HNF4AP41235 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.87■□□□□ 0.29
HNF4AP41235 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.86■□□□□ 0.29
HNF4AP41235 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
HNF4AP41235 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HNF4AP41235 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
HNF4AP41235 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
HNF4AP41235 AC124067.4-201ENST00000519691 2379 ntBASIC16.86■□□□□ 0.29
HNF4AP41235 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
HNF4AP41235 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.86■□□□□ 0.29
HNF4AP41235 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HNF4AP41235 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HNF4AP41235 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HNF4AP41235 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HNF4AP41235 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HNF4AP41235 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.86■□□□□ 0.29
HNF4AP41235 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.86■□□□□ 0.29
HNF4AP41235 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
HNF4AP41235 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HNF4AP41235 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.86■□□□□ 0.29
HNF4AP41235 KRT18P56-201ENST00000507275 550 ntBASIC16.86■□□□□ 0.29
HNF4AP41235 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.86■□□□□ 0.29
HNF4AP41235 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HNF4AP41235 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HNF4AP41235 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.86■□□□□ 0.29
HNF4AP41235 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HNF4AP41235 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HNF4AP41235 AP001094.4-201ENST00000579008 2176 ntBASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms