Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 AC008667.4-201ENST00000607370 168 ntBASIC20.12■□□□□ 0.81
ERCC3P19447 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC3P19447 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC3P19447 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC3P19447 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC3P19447 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
ERCC3P19447 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC3P19447 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.12■□□□□ 0.81
ERCC3P19447 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
ERCC3P19447 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.12■□□□□ 0.81
ERCC3P19447 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
ERCC3P19447 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.12■□□□□ 0.81
ERCC3P19447 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
ERCC3P19447 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC3P19447 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC3P19447 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC3P19447 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.12■□□□□ 0.81
ERCC3P19447 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC3P19447 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC3P19447 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC3P19447 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC20.11■□□□□ 0.81
ERCC3P19447 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC3P19447 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC3P19447 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC3P19447 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC3P19447 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC3P19447 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.11■□□□□ 0.81
ERCC3P19447 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC3P19447 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC3P19447 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC20.11■□□□□ 0.81
ERCC3P19447 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC3P19447 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC20.11■□□□□ 0.81
ERCC3P19447 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
ERCC3P19447 AP006288.1-201ENST00000446065 395 ntBASIC20.11■□□□□ 0.81
ERCC3P19447 HCG4B-203ENST00000450128 991 ntBASIC20.11■□□□□ 0.81
ERCC3P19447 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC20.11■□□□□ 0.81
ERCC3P19447 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC20.11■□□□□ 0.81
ERCC3P19447 AC005829.1-201ENST00000570002 483 ntBASIC20.11■□□□□ 0.81
ERCC3P19447 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC20.11■□□□□ 0.81
ERCC3P19447 AC004790.2-201ENST00000623588 572 ntBASIC20.11■□□□□ 0.81
ERCC3P19447 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
ERCC3P19447 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC3P19447 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC3P19447 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.11■□□□□ 0.81
ERCC3P19447 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC3P19447 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC3P19447 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
ERCC3P19447 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC3P19447 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC3P19447 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC3P19447 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 PCDHB18P-201ENST00000524813 2368 ntBASIC20.1■□□□□ 0.81
ERCC3P19447 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.1■□□□□ 0.81
ERCC3P19447 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC20.1■□□□□ 0.81
ERCC3P19447 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.1■□□□□ 0.81
ERCC3P19447 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.1■□□□□ 0.81
ERCC3P19447 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC20.1■□□□□ 0.81
ERCC3P19447 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 ALG1L5P-201ENST00000482043 771 ntBASIC20.1■□□□□ 0.81
ERCC3P19447 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC20.1■□□□□ 0.81
ERCC3P19447 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.1■□□□□ 0.81
ERCC3P19447 AL596442.2-201ENST00000610240 980 ntBASIC20.1■□□□□ 0.81
ERCC3P19447 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC3P19447 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC3P19447 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC3P19447 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.09■□□□□ 0.81
ERCC3P19447 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC3P19447 AC009949.1-201ENST00000623048 1830 ntBASIC20.09■□□□□ 0.81
ERCC3P19447 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC20.09■□□□□ 0.81
ERCC3P19447 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC20.09■□□□□ 0.81
ERCC3P19447 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC3P19447 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC20.09■□□□□ 0.81
ERCC3P19447 PRSS29P-201ENST00000440800 595 ntBASIC20.09■□□□□ 0.81
ERCC3P19447 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.09■□□□□ 0.81
ERCC3P19447 YBX1P5-201ENST00000509441 847 ntBASIC20.09■□□□□ 0.81
ERCC3P19447 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC3P19447 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC20.09■□□□□ 0.81
ERCC3P19447 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.09■□□□□ 0.81
ERCC3P19447 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC3P19447 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC3P19447 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC3P19447 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.09■□□□□ 0.81
ERCC3P19447 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.09■□□□□ 0.81
ERCC3P19447 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC3P19447 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms