Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 INGX-201ENST00000359239 846 ntBASIC19.2■□□□□ 0.66
TPM1P09493 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.2■□□□□ 0.66
TPM1P09493 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.2■□□□□ 0.66
TPM1P09493 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.2■□□□□ 0.66
TPM1P09493 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.2■□□□□ 0.66
TPM1P09493 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.2■□□□□ 0.66
TPM1P09493 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.2■□□□□ 0.66
TPM1P09493 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.2■□□□□ 0.66
TPM1P09493 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.2■□□□□ 0.66
TPM1P09493 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.2■□□□□ 0.66
TPM1P09493 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
TPM1P09493 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC19.19■□□□□ 0.66
TPM1P09493 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC19.19■□□□□ 0.66
TPM1P09493 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
TPM1P09493 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM1P09493 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.19■□□□□ 0.66
TPM1P09493 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM1P09493 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TPM1P09493 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM1P09493 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
TPM1P09493 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.19■□□□□ 0.66
TPM1P09493 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TPM1P09493 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.19■□□□□ 0.66
TPM1P09493 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.19■□□□□ 0.66
TPM1P09493 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TPM1P09493 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.19■□□□□ 0.66
TPM1P09493 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.19■□□□□ 0.66
TPM1P09493 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TPM1P09493 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.19■□□□□ 0.66
TPM1P09493 AC008550.1-201ENST00000511500 884 ntBASIC19.19■□□□□ 0.66
TPM1P09493 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.19■□□□□ 0.66
TPM1P09493 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.19■□□□□ 0.66
TPM1P09493 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM1P09493 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
TPM1P09493 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM1P09493 AC116353.5-201ENST00000638148 1699 ntBASIC19.19■□□□□ 0.66
TPM1P09493 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM1P09493 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
TPM1P09493 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
TPM1P09493 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
TPM1P09493 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM1P09493 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.19■□□□□ 0.66
TPM1P09493 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM1P09493 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM1P09493 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.19■□□□□ 0.66
TPM1P09493 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM1P09493 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM1P09493 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TPM1P09493 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM1P09493 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
TPM1P09493 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM1P09493 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC19.18■□□□□ 0.66
TPM1P09493 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM1P09493 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
TPM1P09493 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM1P09493 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TPM1P09493 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM1P09493 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM1P09493 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM1P09493 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM1P09493 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM1P09493 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.18■□□□□ 0.66
TPM1P09493 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
TPM1P09493 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.18■□□□□ 0.66
TPM1P09493 TSPY12P-201ENST00000421279 868 ntBASIC19.18■□□□□ 0.66
TPM1P09493 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
TPM1P09493 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.18■□□□□ 0.66
TPM1P09493 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
TPM1P09493 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.18■□□□□ 0.66
TPM1P09493 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
TPM1P09493 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM1P09493 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM1P09493 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TPM1P09493 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM1P09493 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
TPM1P09493 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM1P09493 AGGF1P2-201ENST00000426656 2106 ntBASIC19.18■□□□□ 0.66
TPM1P09493 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC19.18■□□□□ 0.66
TPM1P09493 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
TPM1P09493 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM1P09493 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM1P09493 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.17■□□□□ 0.66
TPM1P09493 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM1P09493 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.17■□□□□ 0.66
TPM1P09493 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TPM1P09493 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM1P09493 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TPM1P09493 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM1P09493 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM1P09493 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TPM1P09493 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms