Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DOAP06340 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DOAP06340 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DOAP06340 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 RHOQP3-201ENST00000437982 621 ntBASIC20.42■□□□□ 0.86
HLA-DOAP06340 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DOAP06340 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DOAP06340 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DOAP06340 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DOAP06340 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 LYSMD4-203ENST00000378904 2122 ntBASIC20.42■□□□□ 0.86
HLA-DOAP06340 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DOAP06340 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DOAP06340 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DOAP06340 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DOAP06340 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DOAP06340 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DOAP06340 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DOAP06340 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DOAP06340 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DOAP06340 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DOAP06340 URGCP-206ENST00000446958 365 ntTSL 2 BASIC20.41■□□□□ 0.86
HLA-DOAP06340 CXCL1P1-201ENST00000502804 216 ntBASIC20.41■□□□□ 0.86
HLA-DOAP06340 KRT19P2-202ENST00000557173 1012 ntBASIC20.41■□□□□ 0.86
HLA-DOAP06340 AC023141.13-201ENST00000604991 943 ntBASIC20.41■□□□□ 0.86
HLA-DOAP06340 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
HLA-DOAP06340 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
HLA-DOAP06340 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DOAP06340 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DOAP06340 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC20.41■□□□□ 0.86
HLA-DOAP06340 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DOAP06340 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
HLA-DOAP06340 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.41■□□□□ 0.86
HLA-DOAP06340 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
HLA-DOAP06340 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.41■□□□□ 0.86
HLA-DOAP06340 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
HLA-DOAP06340 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DOAP06340 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DOAP06340 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DOAP06340 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DOAP06340 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DOAP06340 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DOAP06340 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.4■□□□□ 0.86
HLA-DOAP06340 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DOAP06340 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DOAP06340 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DOAP06340 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC20.4■□□□□ 0.86
HLA-DOAP06340 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.86
HLA-DOAP06340 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DOAP06340 PAWRP1-201ENST00000451083 565 ntBASIC20.4■□□□□ 0.86
HLA-DOAP06340 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC20.4■□□□□ 0.86
HLA-DOAP06340 YBX1P5-201ENST00000509441 847 ntBASIC20.4■□□□□ 0.86
HLA-DOAP06340 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
HLA-DOAP06340 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC20.4■□□□□ 0.86
HLA-DOAP06340 CYB561-216ENST00000582297 897 ntTSL 3 BASIC20.4■□□□□ 0.86
HLA-DOAP06340 MIR4469-201ENST00000583919 79 ntBASIC20.4■□□□□ 0.86
HLA-DOAP06340 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC20.4■□□□□ 0.86
HLA-DOAP06340 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DOAP06340 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
HLA-DOAP06340 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DOAP06340 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DOAP06340 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DOAP06340 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.4■□□□□ 0.86
HLA-DOAP06340 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC20.39■□□□□ 0.86
HLA-DOAP06340 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.39■□□□□ 0.86
HLA-DOAP06340 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.39■□□□□ 0.86
HLA-DOAP06340 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HLA-DOAP06340 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.39■□□□□ 0.86
HLA-DOAP06340 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.39■□□□□ 0.86
HLA-DOAP06340 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HLA-DOAP06340 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
HLA-DOAP06340 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HLA-DOAP06340 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.39■□□□□ 0.85
HLA-DOAP06340 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC20.39■□□□□ 0.85
HLA-DOAP06340 AC025580.3-201ENST00000617932 1424 ntBASIC20.39■□□□□ 0.85
HLA-DOAP06340 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HLA-DOAP06340 HTR5BP-201ENST00000430851 1154 ntBASIC20.39■□□□□ 0.85
HLA-DOAP06340 MKNK2P1-201ENST00000437526 628 ntBASIC20.39■□□□□ 0.85
HLA-DOAP06340 AP006288.1-201ENST00000446065 395 ntBASIC20.39■□□□□ 0.85
HLA-DOAP06340 DNAJB3-202ENST00000449667 1266 ntBASIC20.39■□□□□ 0.85
HLA-DOAP06340 AL078644.1-201ENST00000609881 752 ntBASIC20.39■□□□□ 0.85
HLA-DOAP06340 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.39■□□□□ 0.85
HLA-DOAP06340 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HLA-DOAP06340 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HLA-DOAP06340 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HLA-DOAP06340 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.39■□□□□ 0.85
HLA-DOAP06340 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
HLA-DOAP06340 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC20.39■□□□□ 0.85
HLA-DOAP06340 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HLA-DOAP06340 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
HLA-DOAP06340 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms