Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17■□□□□ 0.31
SIX3O95343 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
SIX3O95343 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17■□□□□ 0.31
SIX3O95343 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 AC005332.1-201ENST00000577698 1310 ntBASIC17■□□□□ 0.31
SIX3O95343 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17■□□□□ 0.31
SIX3O95343 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
SIX3O95343 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
SIX3O95343 AC105020.1-201ENST00000435356 2205 ntBASIC17■□□□□ 0.31
SIX3O95343 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17■□□□□ 0.31
SIX3O95343 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17■□□□□ 0.31
SIX3O95343 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17■□□□□ 0.31
SIX3O95343 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17■□□□□ 0.31
SIX3O95343 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17■□□□□ 0.31
SIX3O95343 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17■□□□□ 0.31
SIX3O95343 AP005901.3-202ENST00000581653 237 ntBASIC17■□□□□ 0.31
SIX3O95343 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17■□□□□ 0.31
SIX3O95343 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17■□□□□ 0.31
SIX3O95343 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17■□□□□ 0.31
SIX3O95343 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX3O95343 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17■□□□□ 0.31
SIX3O95343 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
SIX3O95343 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SIX3O95343 FLJ38576-201ENST00000623820 2459 ntBASIC16.99■□□□□ 0.31
SIX3O95343 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.99■□□□□ 0.31
SIX3O95343 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX3O95343 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.99■□□□□ 0.31
SIX3O95343 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SIX3O95343 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.99■□□□□ 0.31
SIX3O95343 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX3O95343 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX3O95343 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.99■□□□□ 0.31
SIX3O95343 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SIX3O95343 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX3O95343 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.99■□□□□ 0.31
SIX3O95343 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SIX3O95343 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.99■□□□□ 0.31
SIX3O95343 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SIX3O95343 FAM220CP-201ENST00000395253 831 ntBASIC16.99■□□□□ 0.31
SIX3O95343 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX3O95343 MIR1224-201ENST00000408193 85 ntBASIC16.99■□□□□ 0.31
SIX3O95343 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.99■□□□□ 0.31
SIX3O95343 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.99■□□□□ 0.31
SIX3O95343 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.99■□□□□ 0.31
SIX3O95343 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
SIX3O95343 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.99■□□□□ 0.31
SIX3O95343 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.99■□□□□ 0.31
SIX3O95343 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.99■□□□□ 0.31
SIX3O95343 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
SIX3O95343 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX3O95343 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
SIX3O95343 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.99■□□□□ 0.31
SIX3O95343 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.99■□□□□ 0.31
SIX3O95343 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX3O95343 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
SIX3O95343 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.99■□□□□ 0.31
SIX3O95343 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
SIX3O95343 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.99■□□□□ 0.31
SIX3O95343 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
SIX3O95343 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX3O95343 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SIX3O95343 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.99■□□□□ 0.31
SIX3O95343 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.99■□□□□ 0.31
SIX3O95343 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.98■□□□□ 0.31
SIX3O95343 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
SIX3O95343 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.98■□□□□ 0.31
SIX3O95343 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.98■□□□□ 0.31
SIX3O95343 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.98■□□□□ 0.31
SIX3O95343 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SIX3O95343 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.98■□□□□ 0.31
SIX3O95343 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.98■□□□□ 0.31
SIX3O95343 NTF6B-201ENST00000591913 560 ntBASIC16.98■□□□□ 0.31
SIX3O95343 AL121956.5-201ENST00000625261 221 ntBASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms