Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PPOX-214ENST00000535223 664 ntTSL 3 BASIC15.31■□□□□ 0.04
LMX1BO60663 AL662844.1-201ENST00000546340 181 ntBASIC15.31■□□□□ 0.04
LMX1BO60663 TPM1-218ENST00000559281 851 ntTSL 5 BASIC15.31■□□□□ 0.04
LMX1BO60663 AC023511.2-201ENST00000618803 211 ntBASIC15.31■□□□□ 0.04
LMX1BO60663 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC15.31■□□□□ 0.04
LMX1BO60663 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC15.31■□□□□ 0.04
LMX1BO60663 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 AL121761.2-201ENST00000598007 1648 ntBASIC15.31■□□□□ 0.04
LMX1BO60663 Z83836.1-201ENST00000624605 1642 ntBASIC15.31■□□□□ 0.04
LMX1BO60663 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.31■□□□□ 0.04
LMX1BO60663 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
LMX1BO60663 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LMX1BO60663 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
LMX1BO60663 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
LMX1BO60663 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.31■□□□□ 0.04
LMX1BO60663 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
LMX1BO60663 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
LMX1BO60663 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
LMX1BO60663 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.3■□□□□ 0.04
LMX1BO60663 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 IGHGP-201ENST00000390555 1178 ntBASIC15.3■□□□□ 0.04
LMX1BO60663 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
LMX1BO60663 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC15.3■□□□□ 0.04
LMX1BO60663 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC15.3■□□□□ 0.04
LMX1BO60663 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.3■□□□□ 0.04
LMX1BO60663 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.3■□□□□ 0.04
LMX1BO60663 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC15.3■□□□□ 0.04
LMX1BO60663 UBALD1-205ENST00000590891 2641 ntBASIC15.3■□□□□ 0.04
LMX1BO60663 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
LMX1BO60663 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC15.3■□□□□ 0.04
LMX1BO60663 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.3■□□□□ 0.04
LMX1BO60663 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1BO60663 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1BO60663 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1BO60663 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC15.29■□□□□ 0.04
LMX1BO60663 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1BO60663 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.29■□□□□ 0.04
LMX1BO60663 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1BO60663 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1BO60663 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1BO60663 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1BO60663 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.29■□□□□ 0.04
LMX1BO60663 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1BO60663 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.29■□□□□ 0.04
LMX1BO60663 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1BO60663 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1BO60663 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC15.29■□□□□ 0.04
LMX1BO60663 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1BO60663 AL353692.3-201ENST00000407031 1396 ntBASIC15.29■□□□□ 0.04
LMX1BO60663 TNRC18P3-201ENST00000441896 2691 ntBASIC15.29■□□□□ 0.04
LMX1BO60663 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1BO60663 UBC-206ENST00000538617 1303 ntTSL 5 BASIC15.29■□□□□ 0.04
LMX1BO60663 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1BO60663 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC15.29■□□□□ 0.04
LMX1BO60663 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC15.29■□□□□ 0.04
LMX1BO60663 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC15.29■□□□□ 0.04
LMX1BO60663 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC15.29■□□□□ 0.04
LMX1BO60663 AP003733.1-201ENST00000491725 852 ntBASIC15.29■□□□□ 0.04
LMX1BO60663 AC074051.2-201ENST00000565115 352 ntBASIC15.29■□□□□ 0.04
LMX1BO60663 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC15.29■□□□□ 0.04
LMX1BO60663 AC138894.3-201ENST00000603787 634 ntBASIC15.29■□□□□ 0.04
LMX1BO60663 AC006538.3-201ENST00000612495 578 ntBASIC15.29■□□□□ 0.04
LMX1BO60663 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC15.29■□□□□ 0.04
LMX1BO60663 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC15.29■□□□□ 0.04
LMX1BO60663 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.29■□□□□ 0.04
LMX1BO60663 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC15.29■□□□□ 0.04
LMX1BO60663 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
LMX1BO60663 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1BO60663 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.29■□□□□ 0.04
LMX1BO60663 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
LMX1BO60663 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms