Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ 0
COL12A1Q99715 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC15.05■□□□□ 0
COL12A1Q99715 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.05■□□□□ 0
COL12A1Q99715 BNIP3P42-201ENST00000454982 569 ntBASIC15.05■□□□□ 0
COL12A1Q99715 BNIP3P29-201ENST00000598302 571 ntBASIC15.05■□□□□ 0
COL12A1Q99715 AC011447.5-201ENST00000616168 564 ntBASIC15.05■□□□□ 0
COL12A1Q99715 GMCL1P1-201ENST00000463439 1581 ntBASIC15.05■□□□□ -0
COL12A1Q99715 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC15.05■□□□□ -0
COL12A1Q99715 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC15.05■□□□□ -0
COL12A1Q99715 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC15.05■□□□□ -0
COL12A1Q99715 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC15.05■□□□□ -0
COL12A1Q99715 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.05■□□□□ -0
COL12A1Q99715 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.04■□□□□ -0
COL12A1Q99715 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL12A1Q99715 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
COL12A1Q99715 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL12A1Q99715 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.04■□□□□ -0
COL12A1Q99715 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC15.04■□□□□ -0
COL12A1Q99715 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.04■□□□□ -0
COL12A1Q99715 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.04■□□□□ -0
COL12A1Q99715 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC15.04■□□□□ -0
COL12A1Q99715 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.04■□□□□ -0
COL12A1Q99715 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
COL12A1Q99715 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL12A1Q99715 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL12A1Q99715 AC093677.2-201ENST00000600169 1863 ntBASIC15.04■□□□□ -0
COL12A1Q99715 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL12A1Q99715 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC15.04■□□□□ -0
COL12A1Q99715 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC15.04■□□□□ -0
COL12A1Q99715 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.04■□□□□ -0
COL12A1Q99715 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL12A1Q99715 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL12A1Q99715 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC15.04■□□□□ -0
COL12A1Q99715 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL12A1Q99715 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
COL12A1Q99715 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL12A1Q99715 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
COL12A1Q99715 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL12A1Q99715 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.03■□□□□ -0
COL12A1Q99715 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL12A1Q99715 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC15.03■□□□□ -0
COL12A1Q99715 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC15.03■□□□□ -0
COL12A1Q99715 ZNF767P-206ENST00000513792 565 ntBASIC15.03■□□□□ -0
COL12A1Q99715 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.03■□□□□ -0
COL12A1Q99715 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.03■□□□□ -0
COL12A1Q99715 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC15.03■□□□□ -0
COL12A1Q99715 MIR6080-201ENST00000617359 66 ntBASIC15.03■□□□□ -0
COL12A1Q99715 WNT11-204ENST00000621122 789 ntTSL 5 BASIC15.03■□□□□ -0
COL12A1Q99715 AL590560.3-201ENST00000623350 461 ntBASIC15.03■□□□□ -0
COL12A1Q99715 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
COL12A1Q99715 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL12A1Q99715 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL12A1Q99715 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
COL12A1Q99715 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
COL12A1Q99715 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL12A1Q99715 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL12A1Q99715 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
COL12A1Q99715 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.03■□□□□ -0
COL12A1Q99715 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
COL12A1Q99715 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.03■□□□□ -0
COL12A1Q99715 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC15.03■□□□□ -0
COL12A1Q99715 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL12A1Q99715 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
COL12A1Q99715 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL12A1Q99715 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
COL12A1Q99715 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL12A1Q99715 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
COL12A1Q99715 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL12A1Q99715 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
COL12A1Q99715 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL12A1Q99715 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
COL12A1Q99715 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.03■□□□□ -0
COL12A1Q99715 TMEM261P1-201ENST00000604899 340 ntBASIC15.03■□□□□ -0
COL12A1Q99715 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL12A1Q99715 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
COL12A1Q99715 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL12A1Q99715 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC15.02■□□□□ -0
COL12A1Q99715 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
COL12A1Q99715 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL12A1Q99715 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
COL12A1Q99715 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
COL12A1Q99715 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL12A1Q99715 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL12A1Q99715 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL12A1Q99715 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
COL12A1Q99715 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.02■□□□□ -0
COL12A1Q99715 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC15.02■□□□□ -0
COL12A1Q99715 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC15.02■□□□□ -0
COL12A1Q99715 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL12A1Q99715 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC15.02■□□□□ -0
COL12A1Q99715 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC15.02■□□□□ -0
COL12A1Q99715 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.02■□□□□ -0
COL12A1Q99715 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL12A1Q99715 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.02■□□□□ -0
COL12A1Q99715 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL12A1Q99715 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL12A1Q99715 AC092506.1-202ENST00000401022 528 ntBASIC15.02□□□□□ -0.01
COL12A1Q99715 LINC00982-205ENST00000420957 435 ntBASIC15.02□□□□□ -0.01
COL12A1Q99715 AL512343.1-201ENST00000605837 169 ntBASIC15.02□□□□□ -0.01
COL12A1Q99715 AC244093.1-201ENST00000610837 814 ntBASIC15.02□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms