Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 NUS1P1-201ENST00000446295 882 ntBASIC16.72■□□□□ 0.27
VMP1Q96GC9 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.72■□□□□ 0.27
VMP1Q96GC9 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 PP12613-201ENST00000424958 2230 ntBASIC16.72■□□□□ 0.27
VMP1Q96GC9 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.71■□□□□ 0.27
VMP1Q96GC9 AC022898.2-201ENST00000616822 1312 ntBASIC16.71■□□□□ 0.27
VMP1Q96GC9 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
VMP1Q96GC9 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.71■□□□□ 0.27
VMP1Q96GC9 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VMP1Q96GC9 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VMP1Q96GC9 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VMP1Q96GC9 AL121761.2-201ENST00000598007 1648 ntBASIC16.71■□□□□ 0.27
VMP1Q96GC9 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
VMP1Q96GC9 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
VMP1Q96GC9 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
VMP1Q96GC9 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VMP1Q96GC9 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.71■□□□□ 0.27
VMP1Q96GC9 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VMP1Q96GC9 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
VMP1Q96GC9 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.71■□□□□ 0.27
VMP1Q96GC9 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.71■□□□□ 0.27
VMP1Q96GC9 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.71■□□□□ 0.27
VMP1Q96GC9 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.71■□□□□ 0.27
VMP1Q96GC9 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.71■□□□□ 0.27
VMP1Q96GC9 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.71■□□□□ 0.27
VMP1Q96GC9 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VMP1Q96GC9 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
VMP1Q96GC9 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VMP1Q96GC9 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.71■□□□□ 0.27
VMP1Q96GC9 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.71■□□□□ 0.27
VMP1Q96GC9 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VMP1Q96GC9 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VMP1Q96GC9 AL096828.2-201ENST00000567259 1965 ntBASIC16.71■□□□□ 0.27
VMP1Q96GC9 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VMP1Q96GC9 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
VMP1Q96GC9 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
VMP1Q96GC9 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VMP1Q96GC9 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
VMP1Q96GC9 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VMP1Q96GC9 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VMP1Q96GC9 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VMP1Q96GC9 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VMP1Q96GC9 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VMP1Q96GC9 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VMP1Q96GC9 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VMP1Q96GC9 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VMP1Q96GC9 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VMP1Q96GC9 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VMP1Q96GC9 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VMP1Q96GC9 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 IGHV3-47-201ENST00000425060 335 ntBASIC16.7■□□□□ 0.26
VMP1Q96GC9 DUSP5P1-201ENST00000441325 1139 ntBASIC16.7■□□□□ 0.26
VMP1Q96GC9 MINOS1P3-201ENST00000457048 203 ntBASIC16.7■□□□□ 0.26
VMP1Q96GC9 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 AC112698.1-201ENST00000510299 916 ntBASIC16.7■□□□□ 0.26
VMP1Q96GC9 DUTP2-201ENST00000519164 463 ntBASIC16.7■□□□□ 0.26
VMP1Q96GC9 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 FLJ16779-201ENST00000612722 7638 ntBASIC16.7■□□□□ 0.26
VMP1Q96GC9 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VMP1Q96GC9 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VMP1Q96GC9 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VMP1Q96GC9 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms