Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 KRT8P47-201ENST00000604727 1398 ntBASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CLIP3Q96DZ5 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
CLIP3Q96DZ5 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.83■□□□□ 0.29
CLIP3Q96DZ5 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
CLIP3Q96DZ5 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CLIP3Q96DZ5 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 AC096633.1-201ENST00000422446 749 ntBASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 IL9RP2-201ENST00000423948 1312 ntBASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 AC018712.1-201ENST00000455767 687 ntBASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 AC010460.3-201ENST00000511359 1579 ntBASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CLIP3Q96DZ5 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 AC084018.2-201ENST00000613093 2607 ntBASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 SART3-203ENST00000546611 1184 ntBASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 AL162727.3-201ENST00000635661 2787 ntBASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLIP3Q96DZ5 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP3Q96DZ5 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms