Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
ERCC4Q92889 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.77■□□□□ 0.76
ERCC4Q92889 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC4Q92889 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC4Q92889 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.77■□□□□ 0.76
ERCC4Q92889 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC4Q92889 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC4Q92889 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC4Q92889 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC4Q92889 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC4Q92889 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC4Q92889 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC4Q92889 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
ERCC4Q92889 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
ERCC4Q92889 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC4Q92889 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.77■□□□□ 0.76
ERCC4Q92889 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC4Q92889 MIR662-201ENST00000384847 95 ntBASIC19.77■□□□□ 0.76
ERCC4Q92889 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.77■□□□□ 0.76
ERCC4Q92889 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC4Q92889 HYMAI.1-201ENST00000620949 238 ntBASIC19.77■□□□□ 0.76
ERCC4Q92889 AC006011.2-201ENST00000621313 1158 ntBASIC19.77■□□□□ 0.76
ERCC4Q92889 AL031432.5-201ENST00000641059 760 ntBASIC19.77■□□□□ 0.76
ERCC4Q92889 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.77■□□□□ 0.76
ERCC4Q92889 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC19.77■□□□□ 0.76
ERCC4Q92889 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC4Q92889 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
ERCC4Q92889 PCDH8P1-201ENST00000428983 2773 ntBASIC19.77■□□□□ 0.75
ERCC4Q92889 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ERCC4Q92889 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.76■□□□□ 0.75
ERCC4Q92889 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ERCC4Q92889 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.76■□□□□ 0.75
ERCC4Q92889 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.76■□□□□ 0.75
ERCC4Q92889 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
ERCC4Q92889 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
ERCC4Q92889 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ERCC4Q92889 PCDHB19P-201ENST00000570871 2371 ntBASIC19.76■□□□□ 0.75
ERCC4Q92889 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.76■□□□□ 0.75
ERCC4Q92889 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ERCC4Q92889 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ERCC4Q92889 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.76■□□□□ 0.75
ERCC4Q92889 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
ERCC4Q92889 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ERCC4Q92889 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ERCC4Q92889 AC005104.2-201ENST00000427818 678 ntBASIC19.76■□□□□ 0.75
ERCC4Q92889 AC112907.2-201ENST00000448639 330 ntBASIC19.76■□□□□ 0.75
ERCC4Q92889 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ERCC4Q92889 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.76■□□□□ 0.75
ERCC4Q92889 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.76■□□□□ 0.75
ERCC4Q92889 AC005332.3-201ENST00000589904 676 ntBASIC19.76■□□□□ 0.75
ERCC4Q92889 AC097493.4-201ENST00000641197 219 ntBASIC19.76■□□□□ 0.75
ERCC4Q92889 AC105020.1-201ENST00000435356 2205 ntBASIC19.76■□□□□ 0.75
ERCC4Q92889 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
ERCC4Q92889 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
ERCC4Q92889 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ERCC4Q92889 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC19.76■□□□□ 0.75
ERCC4Q92889 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC19.76■□□□□ 0.75
ERCC4Q92889 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
ERCC4Q92889 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ERCC4Q92889 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19.76■□□□□ 0.75
ERCC4Q92889 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
ERCC4Q92889 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
ERCC4Q92889 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ERCC4Q92889 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ERCC4Q92889 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.75■□□□□ 0.75
ERCC4Q92889 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
ERCC4Q92889 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ERCC4Q92889 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.75■□□□□ 0.75
ERCC4Q92889 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ERCC4Q92889 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC19.75■□□□□ 0.75
ERCC4Q92889 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
ERCC4Q92889 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ERCC4Q92889 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ERCC4Q92889 AC092171.3-201ENST00000610122 2651 ntBASIC19.75■□□□□ 0.75
ERCC4Q92889 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
ERCC4Q92889 BX664615.1-201ENST00000443558 458 ntBASIC19.75■□□□□ 0.75
ERCC4Q92889 SPDYE13P-201ENST00000445314 798 ntBASIC19.75■□□□□ 0.75
ERCC4Q92889 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.75■□□□□ 0.75
ERCC4Q92889 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ERCC4Q92889 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.75■□□□□ 0.75
ERCC4Q92889 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ERCC4Q92889 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.75■□□□□ 0.75
ERCC4Q92889 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.75■□□□□ 0.75
ERCC4Q92889 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
ERCC4Q92889 GPR32P1-201ENST00000601788 811 ntBASIC19.75■□□□□ 0.75
ERCC4Q92889 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.75■□□□□ 0.75
ERCC4Q92889 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.75■□□□□ 0.75
ERCC4Q92889 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
ERCC4Q92889 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
ERCC4Q92889 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
ERCC4Q92889 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.75■□□□□ 0.75
ERCC4Q92889 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
ERCC4Q92889 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ERCC4Q92889 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ERCC4Q92889 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.75■□□□□ 0.75
ERCC4Q92889 AC116353.5-201ENST00000638148 1699 ntBASIC19.75■□□□□ 0.75
ERCC4Q92889 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
ERCC4Q92889 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ERCC4Q92889 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ERCC4Q92889 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms