Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 AC073621.1-201ENST00000392730 636 ntBASIC16.73■□□□□ 0.27
COL28A1Q2UY09 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 AC136632.2-201ENST00000512891 861 ntBASIC16.73■□□□□ 0.27
COL28A1Q2UY09 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 AJ011932.1-201ENST00000621707 465 ntBASIC16.73■□□□□ 0.27
COL28A1Q2UY09 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 AC068880.1-201ENST00000507289 2297 ntBASIC16.72■□□□□ 0.27
COL28A1Q2UY09 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 PMS2P4-201ENST00000412466 1052 ntBASIC16.72■□□□□ 0.27
COL28A1Q2UY09 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.72■□□□□ 0.27
COL28A1Q2UY09 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
COL28A1Q2UY09 GMCL1P1-201ENST00000463439 1581 ntBASIC16.72■□□□□ 0.27
COL28A1Q2UY09 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.71■□□□□ 0.27
COL28A1Q2UY09 AC025678.2-201ENST00000562061 970 ntBASIC16.71■□□□□ 0.27
COL28A1Q2UY09 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL28A1Q2UY09 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms