Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC14.23□□□□□ -0.13
LMO4P61968 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
LMO4P61968 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LMO4P61968 AC133963.1-201ENST00000504166 1679 ntBASIC14.23□□□□□ -0.13
LMO4P61968 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LMO4P61968 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
LMO4P61968 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC14.23□□□□□ -0.13
LMO4P61968 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LMO4P61968 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC14.23□□□□□ -0.13
LMO4P61968 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
LMO4P61968 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LMO4P61968 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC14.23□□□□□ -0.13
LMO4P61968 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC14.22□□□□□ -0.13
LMO4P61968 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LMO4P61968 REM2-202ENST00000536884 1331 ntTSL 2 BASIC14.22□□□□□ -0.13
LMO4P61968 AC129492.6-201ENST00000611383 1305 ntBASIC14.22□□□□□ -0.13
LMO4P61968 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMO4P61968 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMO4P61968 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC14.22□□□□□ -0.13
LMO4P61968 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC14.22□□□□□ -0.13
LMO4P61968 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMO4P61968 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMO4P61968 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LMO4P61968 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC14.22□□□□□ -0.13
LMO4P61968 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.22□□□□□ -0.13
LMO4P61968 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
LMO4P61968 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC14.22□□□□□ -0.13
LMO4P61968 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC14.22□□□□□ -0.13
LMO4P61968 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.22□□□□□ -0.13
LMO4P61968 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC14.22□□□□□ -0.13
LMO4P61968 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC14.22□□□□□ -0.13
LMO4P61968 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
LMO4P61968 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
LMO4P61968 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMO4P61968 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC14.22□□□□□ -0.13
LMO4P61968 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMO4P61968 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC14.22□□□□□ -0.13
LMO4P61968 ACTL9-202ENST00000612068 1252 ntBASIC14.22□□□□□ -0.13
LMO4P61968 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC14.22□□□□□ -0.13
LMO4P61968 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMO4P61968 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC14.22□□□□□ -0.13
LMO4P61968 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC14.22□□□□□ -0.13
LMO4P61968 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC14.22□□□□□ -0.13
LMO4P61968 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMO4P61968 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
LMO4P61968 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.13
LMO4P61968 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMO4P61968 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
LMO4P61968 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMO4P61968 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
LMO4P61968 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
LMO4P61968 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC14.21□□□□□ -0.13
LMO4P61968 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMO4P61968 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC14.21□□□□□ -0.13
LMO4P61968 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC14.21□□□□□ -0.13
LMO4P61968 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC14.21□□□□□ -0.13
LMO4P61968 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LMO4P61968 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
LMO4P61968 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMO4P61968 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMO4P61968 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC14.21□□□□□ -0.13
LMO4P61968 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
LMO4P61968 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMO4P61968 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
LMO4P61968 FAM58CP-201ENST00000435741 640 ntBASIC14.21□□□□□ -0.13
LMO4P61968 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
LMO4P61968 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC14.21□□□□□ -0.13
LMO4P61968 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LMO4P61968 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMO4P61968 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
LMO4P61968 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC14.21□□□□□ -0.13
LMO4P61968 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
LMO4P61968 SNHG9-202ENST00000564014 471 ntBASIC14.21□□□□□ -0.13
LMO4P61968 AL031432.2-201ENST00000566714 459 ntBASIC14.21□□□□□ -0.13
LMO4P61968 AL928711.1-201ENST00000570165 459 ntBASIC14.21□□□□□ -0.13
LMO4P61968 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC14.21□□□□□ -0.13
LMO4P61968 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC14.21□□□□□ -0.13
LMO4P61968 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC14.21□□□□□ -0.13
LMO4P61968 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC14.21□□□□□ -0.13
LMO4P61968 MED16-214ENST00000617672 554 ntTSL 5 BASIC14.21□□□□□ -0.13
LMO4P61968 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LMO4P61968 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMO4P61968 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LMO4P61968 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMO4P61968 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LMO4P61968 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
LMO4P61968 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
LMO4P61968 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
LMO4P61968 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC14.21□□□□□ -0.14
LMO4P61968 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC14.2□□□□□ -0.14
LMO4P61968 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
LMO4P61968 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
LMO4P61968 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMO4P61968 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMO4P61968 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMO4P61968 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC14.2□□□□□ -0.14
LMO4P61968 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
LMO4P61968 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMO4P61968 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMO4P61968 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms