Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC23.86■■□□□ 1.41
MSH6P52701 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
MSH6P52701 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
MSH6P52701 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC23.86■■□□□ 1.41
MSH6P52701 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
MSH6P52701 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
MSH6P52701 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC23.86■■□□□ 1.41
MSH6P52701 PTPA-220ENST00000436883 532 ntTSL 4 BASIC23.86■■□□□ 1.41
MSH6P52701 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC23.86■■□□□ 1.41
MSH6P52701 AC027369.6-201ENST00000525520 931 ntBASIC23.86■■□□□ 1.41
MSH6P52701 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC23.86■■□□□ 1.41
MSH6P52701 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC23.86■■□□□ 1.41
MSH6P52701 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
MSH6P52701 MIR4453-201ENST00000584019 89 ntBASIC23.86■■□□□ 1.41
MSH6P52701 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC23.86■■□□□ 1.41
MSH6P52701 SSH2-211ENST00000590153 570 ntTSL 4 BASIC23.86■■□□□ 1.41
MSH6P52701 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC23.86■■□□□ 1.41
MSH6P52701 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC23.86■■□□□ 1.41
MSH6P52701 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
MSH6P52701 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC23.85■■□□□ 1.41
MSH6P52701 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
MSH6P52701 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
MSH6P52701 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC23.85■■□□□ 1.41
MSH6P52701 HMGA1P7-201ENST00000406908 502 ntBASIC23.85■■□□□ 1.41
MSH6P52701 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC23.85■■□□□ 1.41
MSH6P52701 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
MSH6P52701 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC23.85■■□□□ 1.41
MSH6P52701 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
MSH6P52701 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
MSH6P52701 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC23.85■■□□□ 1.41
MSH6P52701 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
MSH6P52701 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
MSH6P52701 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
MSH6P52701 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
MSH6P52701 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
MSH6P52701 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
MSH6P52701 ENSA-206ENST00000361631 725 ntTSL 2 BASIC23.84■■□□□ 1.41
MSH6P52701 AP000842.3-202ENST00000569238 1080 ntBASIC23.84■■□□□ 1.41
MSH6P52701 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC23.84■■□□□ 1.41
MSH6P52701 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
MSH6P52701 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
MSH6P52701 AL031598.1-201ENST00000561511 1773 ntBASIC23.84■■□□□ 1.41
MSH6P52701 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC23.84■■□□□ 1.41
MSH6P52701 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
MSH6P52701 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
MSH6P52701 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
MSH6P52701 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
MSH6P52701 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC23.83■■□□□ 1.41
MSH6P52701 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC23.83■■□□□ 1.41
MSH6P52701 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
MSH6P52701 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC23.83■■□□□ 1.41
MSH6P52701 AC109635.5-201ENST00000533593 962 ntBASIC23.83■■□□□ 1.41
MSH6P52701 CDK4-206ENST00000549606 558 ntTSL 2 BASIC23.83■■□□□ 1.41
MSH6P52701 TP53TG3HP-202ENST00000569755 579 ntBASIC23.83■■□□□ 1.41
MSH6P52701 SSH2-210ENST00000582084 560 ntTSL 3 BASIC23.83■■□□□ 1.41
MSH6P52701 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
MSH6P52701 AC017083.2-201ENST00000608069 979 ntBASIC23.83■■□□□ 1.41
MSH6P52701 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC23.83■■□□□ 1.41
MSH6P52701 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
MSH6P52701 AC126763.1-201ENST00000552015 2118 ntBASIC23.83■■□□□ 1.41
MSH6P52701 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC23.83■■□□□ 1.41
MSH6P52701 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
MSH6P52701 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
MSH6P52701 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
MSH6P52701 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
MSH6P52701 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
MSH6P52701 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
MSH6P52701 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
MSH6P52701 AL135999.2-201ENST00000622438 1686 ntBASIC23.82■■□□□ 1.4
MSH6P52701 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC23.82■■□□□ 1.4
MSH6P52701 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
MSH6P52701 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC23.82■■□□□ 1.4
MSH6P52701 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC23.82■■□□□ 1.4
MSH6P52701 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC23.82■■□□□ 1.4
MSH6P52701 SPDYE12P-201ENST00000618416 771 ntBASIC23.82■■□□□ 1.4
MSH6P52701 AC008267.7-201ENST00000624570 1194 ntBASIC23.82■■□□□ 1.4
MSH6P52701 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC23.82■■□□□ 1.4
MSH6P52701 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
MSH6P52701 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
MSH6P52701 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
MSH6P52701 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
MSH6P52701 AC087289.5-201ENST00000586076 3175 ntBASIC23.82■■□□□ 1.4
MSH6P52701 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC23.82■■□□□ 1.4
MSH6P52701 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
MSH6P52701 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
MSH6P52701 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH6P52701 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH6P52701 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH6P52701 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC23.81■■□□□ 1.4
MSH6P52701 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC23.81■■□□□ 1.4
MSH6P52701 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC23.81■■□□□ 1.4
MSH6P52701 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC23.81■■□□□ 1.4
MSH6P52701 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC23.81■■□□□ 1.4
MSH6P52701 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC23.81■■□□□ 1.4
MSH6P52701 GIMAP3P-201ENST00000495150 836 ntBASIC23.81■■□□□ 1.4
MSH6P52701 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC23.81■■□□□ 1.4
MSH6P52701 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
MSH6P52701 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH6P52701 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC23.81■■□□□ 1.4
MSH6P52701 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC23.81■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms