Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.1■□□□□ 0.33
CDH3P22223 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.1■□□□□ 0.33
CDH3P22223 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.1■□□□□ 0.33
CDH3P22223 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.1■□□□□ 0.33
CDH3P22223 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 AC096633.1-201ENST00000422446 749 ntBASIC17.1■□□□□ 0.33
CDH3P22223 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.1■□□□□ 0.33
CDH3P22223 AL160237.2-201ENST00000556165 472 ntBASIC17.1■□□□□ 0.33
CDH3P22223 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.1■□□□□ 0.33
CDH3P22223 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.1■□□□□ 0.33
CDH3P22223 AC008608.2-201ENST00000606089 416 ntBASIC17.1■□□□□ 0.33
CDH3P22223 AC116407.2-201ENST00000613639 860 ntBASIC17.1■□□□□ 0.33
CDH3P22223 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.1■□□□□ 0.33
CDH3P22223 MST1L-201ENST00000442552 2185 ntBASIC17.1■□□□□ 0.33
CDH3P22223 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CDH3P22223 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.1■□□□□ 0.33
CDH3P22223 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.1■□□□□ 0.33
CDH3P22223 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CDH3P22223 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.1■□□□□ 0.33
CDH3P22223 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.1■□□□□ 0.33
CDH3P22223 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDH3P22223 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CDH3P22223 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CDH3P22223 AC080080.1-201ENST00000625121 2420 ntBASIC17.09■□□□□ 0.33
CDH3P22223 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.09■□□□□ 0.33
CDH3P22223 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CDH3P22223 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CDH3P22223 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.09■□□□□ 0.33
CDH3P22223 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.09■□□□□ 0.33
CDH3P22223 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.09■□□□□ 0.33
CDH3P22223 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDH3P22223 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CDH3P22223 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.09■□□□□ 0.33
CDH3P22223 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.09■□□□□ 0.33
CDH3P22223 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CDH3P22223 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.09■□□□□ 0.33
CDH3P22223 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDH3P22223 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.09■□□□□ 0.33
CDH3P22223 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH3P22223 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.09■□□□□ 0.33
CDH3P22223 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.08■□□□□ 0.33
CDH3P22223 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
CDH3P22223 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDH3P22223 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDH3P22223 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDH3P22223 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
CDH3P22223 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDH3P22223 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDH3P22223 CICP6-201ENST00000457191 2729 ntBASIC17.08■□□□□ 0.33
CDH3P22223 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDH3P22223 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
CDH3P22223 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
CDH3P22223 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDH3P22223 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDH3P22223 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.08■□□□□ 0.33
CDH3P22223 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.33
CDH3P22223 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDH3P22223 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms