Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
COL5A1P20908 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL5A1P20908 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL5A1P20908 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
COL5A1P20908 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL5A1P20908 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL5A1P20908 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL5A1P20908 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.54■□□□□ 0.24
COL5A1P20908 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL5A1P20908 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.54■□□□□ 0.24
COL5A1P20908 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.54■□□□□ 0.24
COL5A1P20908 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.54■□□□□ 0.24
COL5A1P20908 PUDP-206ENST00000540122 825 ntTSL 2 BASIC16.54■□□□□ 0.24
COL5A1P20908 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.54■□□□□ 0.24
COL5A1P20908 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL5A1P20908 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.54■□□□□ 0.24
COL5A1P20908 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL5A1P20908 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL5A1P20908 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.54■□□□□ 0.24
COL5A1P20908 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL5A1P20908 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.54■□□□□ 0.24
COL5A1P20908 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL5A1P20908 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL5A1P20908 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.54■□□□□ 0.24
COL5A1P20908 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL5A1P20908 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
COL5A1P20908 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
COL5A1P20908 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL5A1P20908 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL5A1P20908 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
COL5A1P20908 MIR661-201ENST00000384842 89 ntBASIC16.54■□□□□ 0.24
COL5A1P20908 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.54■□□□□ 0.24
COL5A1P20908 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.54■□□□□ 0.24
COL5A1P20908 FAM58DP-201ENST00000428076 619 ntBASIC16.54■□□□□ 0.24
COL5A1P20908 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
COL5A1P20908 AC002472.2-201ENST00000442739 958 ntBASIC16.54■□□□□ 0.24
COL5A1P20908 DUX4L27-201ENST00000554796 1261 ntBASIC16.54■□□□□ 0.24
COL5A1P20908 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL5A1P20908 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.54■□□□□ 0.24
COL5A1P20908 AL009183.1-201ENST00000603760 355 ntBASIC16.54■□□□□ 0.24
COL5A1P20908 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL5A1P20908 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
COL5A1P20908 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL5A1P20908 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL5A1P20908 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL5A1P20908 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16.53■□□□□ 0.24
COL5A1P20908 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC16.53■□□□□ 0.24
COL5A1P20908 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.53■□□□□ 0.24
COL5A1P20908 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL5A1P20908 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL5A1P20908 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL5A1P20908 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.53■□□□□ 0.24
COL5A1P20908 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.53■□□□□ 0.24
COL5A1P20908 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.53■□□□□ 0.24
COL5A1P20908 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL5A1P20908 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL5A1P20908 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.53■□□□□ 0.24
COL5A1P20908 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.53■□□□□ 0.24
COL5A1P20908 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.53■□□□□ 0.24
COL5A1P20908 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL5A1P20908 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL5A1P20908 AC107890.1-201ENST00000422478 521 ntBASIC16.53■□□□□ 0.24
COL5A1P20908 AC055876.3-201ENST00000431496 288 ntBASIC16.53■□□□□ 0.24
COL5A1P20908 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.53■□□□□ 0.24
COL5A1P20908 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.53■□□□□ 0.24
COL5A1P20908 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.53■□□□□ 0.24
COL5A1P20908 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL5A1P20908 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.53■□□□□ 0.24
COL5A1P20908 AC138649.4-201ENST00000612222 287 ntBASIC16.53■□□□□ 0.24
COL5A1P20908 AL161645.1-201ENST00000622716 1255 ntBASIC16.53■□□□□ 0.24
COL5A1P20908 AC084121.4-201ENST00000641598 221 ntBASIC16.53■□□□□ 0.24
COL5A1P20908 AF228730.8-201ENST00000642140 221 ntBASIC16.53■□□□□ 0.24
COL5A1P20908 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL5A1P20908 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.53■□□□□ 0.24
COL5A1P20908 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
COL5A1P20908 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL5A1P20908 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL5A1P20908 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL5A1P20908 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
COL5A1P20908 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL5A1P20908 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL5A1P20908 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.52■□□□□ 0.24
COL5A1P20908 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL5A1P20908 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL5A1P20908 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC16.52■□□□□ 0.24
COL5A1P20908 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL5A1P20908 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL5A1P20908 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.52■□□□□ 0.24
COL5A1P20908 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL5A1P20908 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL5A1P20908 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.52■□□□□ 0.24
COL5A1P20908 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.52■□□□□ 0.24
COL5A1P20908 AC236430.1-201ENST00000402231 743 ntBASIC16.52■□□□□ 0.24
COL5A1P20908 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL5A1P20908 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.52■□□□□ 0.24
COL5A1P20908 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.52■□□□□ 0.24
COL5A1P20908 DUX4L17-201ENST00000557360 1267 ntBASIC16.52■□□□□ 0.24
COL5A1P20908 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC16.52■□□□□ 0.24
COL5A1P20908 AL035252.4-201ENST00000624174 288 ntBASIC16.52■□□□□ 0.24
COL5A1P20908 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms