Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A3P12111 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.91■□□□□ 0.46
COL6A3P12111 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.91■□□□□ 0.46
COL6A3P12111 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
COL6A3P12111 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A3P12111 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A3P12111 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC17.91■□□□□ 0.46
COL6A3P12111 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC17.91■□□□□ 0.46
COL6A3P12111 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC17.91■□□□□ 0.46
COL6A3P12111 RPSAP52-203ENST00000622976 1023 ntBASIC17.91■□□□□ 0.46
COL6A3P12111 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.91■□□□□ 0.46
COL6A3P12111 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A3P12111 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A3P12111 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC17.91■□□□□ 0.46
COL6A3P12111 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC17.91■□□□□ 0.46
COL6A3P12111 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC17.91■□□□□ 0.46
COL6A3P12111 AC234644.1-201ENST00000406065 370 ntBASIC17.91■□□□□ 0.46
COL6A3P12111 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A3P12111 RPL17P11-201ENST00000417593 544 ntBASIC17.91■□□□□ 0.46
COL6A3P12111 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A3P12111 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC17.91■□□□□ 0.46
COL6A3P12111 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC17.91■□□□□ 0.46
COL6A3P12111 U62317.3-201ENST00000608319 855 ntBASIC17.91■□□□□ 0.46
COL6A3P12111 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A3P12111 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A3P12111 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.9■□□□□ 0.46
COL6A3P12111 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
COL6A3P12111 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.9■□□□□ 0.46
COL6A3P12111 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A3P12111 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.9■□□□□ 0.46
COL6A3P12111 AC005229.1-201ENST00000392885 409 ntBASIC17.9■□□□□ 0.46
COL6A3P12111 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC17.9■□□□□ 0.46
COL6A3P12111 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A3P12111 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC17.9■□□□□ 0.46
COL6A3P12111 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.9■□□□□ 0.46
COL6A3P12111 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.9■□□□□ 0.46
COL6A3P12111 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.9■□□□□ 0.46
COL6A3P12111 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC17.9■□□□□ 0.46
COL6A3P12111 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A3P12111 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A3P12111 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A3P12111 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.9■□□□□ 0.46
COL6A3P12111 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.9■□□□□ 0.46
COL6A3P12111 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A3P12111 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
COL6A3P12111 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A3P12111 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
COL6A3P12111 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A3P12111 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A3P12111 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC17.9■□□□□ 0.46
COL6A3P12111 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
COL6A3P12111 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
COL6A3P12111 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
COL6A3P12111 AL009183.1-201ENST00000603760 355 ntBASIC17.9■□□□□ 0.46
COL6A3P12111 AL032819.2-201ENST00000624543 2162 ntBASIC17.9■□□□□ 0.46
COL6A3P12111 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC17.9■□□□□ 0.46
COL6A3P12111 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.9■□□□□ 0.46
COL6A3P12111 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A3P12111 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A3P12111 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A3P12111 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
COL6A3P12111 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.9■□□□□ 0.46
COL6A3P12111 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A3P12111 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
COL6A3P12111 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
COL6A3P12111 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
COL6A3P12111 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
COL6A3P12111 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.89■□□□□ 0.46
COL6A3P12111 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.89■□□□□ 0.46
COL6A3P12111 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.89■□□□□ 0.46
COL6A3P12111 STK25P1-201ENST00000585406 838 ntBASIC17.89■□□□□ 0.46
COL6A3P12111 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.46
COL6A3P12111 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.89■□□□□ 0.46
COL6A3P12111 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A3P12111 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
COL6A3P12111 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
COL6A3P12111 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A3P12111 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
COL6A3P12111 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A3P12111 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
COL6A3P12111 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A3P12111 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A3P12111 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.89■□□□□ 0.45
COL6A3P12111 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.89■□□□□ 0.45
COL6A3P12111 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.89■□□□□ 0.45
COL6A3P12111 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.89■□□□□ 0.45
COL6A3P12111 ZNF890P-202ENST00000530367 1156 ntBASIC17.89■□□□□ 0.45
COL6A3P12111 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.89■□□□□ 0.45
COL6A3P12111 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A3P12111 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
COL6A3P12111 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.45
COL6A3P12111 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A3P12111 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A3P12111 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.89■□□□□ 0.45
COL6A3P12111 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A3P12111 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A3P12111 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A3P12111 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.89■□□□□ 0.45
COL6A3P12111 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A3P12111 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms