Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
MMP3P08254 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.66
MMP3P08254 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
MMP3P08254 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.14■□□□□ 0.66
MMP3P08254 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
MMP3P08254 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MMP3P08254 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.14■□□□□ 0.65
MMP3P08254 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
MMP3P08254 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
MMP3P08254 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MMP3P08254 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
MMP3P08254 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.14■□□□□ 0.65
MMP3P08254 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.14■□□□□ 0.65
MMP3P08254 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC19.14■□□□□ 0.65
MMP3P08254 NMU-203ENST00000507338 658 ntTSL 3 BASIC19.14■□□□□ 0.65
MMP3P08254 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC19.14■□□□□ 0.65
MMP3P08254 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC19.14■□□□□ 0.65
MMP3P08254 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
MMP3P08254 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
MMP3P08254 IGHV3OR16-6-201ENST00000568775 360 ntBASIC19.14■□□□□ 0.65
MMP3P08254 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC19.14■□□□□ 0.65
MMP3P08254 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC19.14■□□□□ 0.65
MMP3P08254 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MMP3P08254 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC19.14■□□□□ 0.65
MMP3P08254 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.14■□□□□ 0.65
MMP3P08254 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
MMP3P08254 AC012317.2-201ENST00000623305 2251 ntBASIC19.14■□□□□ 0.65
MMP3P08254 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC19.14■□□□□ 0.65
MMP3P08254 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
MMP3P08254 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
MMP3P08254 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.65
MMP3P08254 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.14■□□□□ 0.65
MMP3P08254 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
MMP3P08254 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
MMP3P08254 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
MMP3P08254 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
MMP3P08254 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.14■□□□□ 0.65
MMP3P08254 AL354751.1-201ENST00000412768 1863 ntBASIC19.14■□□□□ 0.65
MMP3P08254 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
MMP3P08254 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MMP3P08254 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MMP3P08254 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MMP3P08254 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
MMP3P08254 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MMP3P08254 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC19.13■□□□□ 0.65
MMP3P08254 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MMP3P08254 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19.13■□□□□ 0.65
MMP3P08254 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC19.13■□□□□ 0.65
MMP3P08254 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.13■□□□□ 0.65
MMP3P08254 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MMP3P08254 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC19.13■□□□□ 0.65
MMP3P08254 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.13■□□□□ 0.65
MMP3P08254 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MMP3P08254 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
MMP3P08254 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MMP3P08254 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MMP3P08254 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MMP3P08254 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC19.13■□□□□ 0.65
MMP3P08254 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.13■□□□□ 0.65
MMP3P08254 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MMP3P08254 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
MMP3P08254 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MMP3P08254 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.13■□□□□ 0.65
MMP3P08254 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MMP3P08254 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
MMP3P08254 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP3P08254 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MMP3P08254 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.12■□□□□ 0.65
MMP3P08254 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MMP3P08254 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
MMP3P08254 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MMP3P08254 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC19.12■□□□□ 0.65
MMP3P08254 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP3P08254 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP3P08254 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.12■□□□□ 0.65
MMP3P08254 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC19.12■□□□□ 0.65
MMP3P08254 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP3P08254 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.12■□□□□ 0.65
MMP3P08254 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC19.12■□□□□ 0.65
MMP3P08254 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MMP3P08254 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
MMP3P08254 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
MMP3P08254 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC19.12■□□□□ 0.65
MMP3P08254 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC19.12■□□□□ 0.65
MMP3P08254 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC19.12■□□□□ 0.65
MMP3P08254 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC19.12■□□□□ 0.65
MMP3P08254 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MMP3P08254 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.12■□□□□ 0.65
MMP3P08254 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC19.12■□□□□ 0.65
MMP3P08254 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP3P08254 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP3P08254 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP3P08254 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP3P08254 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP3P08254 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP3P08254 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MMP3P08254 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MMP3P08254 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.11■□□□□ 0.65
MMP3P08254 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MMP3P08254 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms