Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.1■□□□□ 0.49
AP4E1Q9UPM8 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 ABCD1P5-201ENST00000445663 754 ntBASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 PRELID1P1-202ENST00000567272 903 ntBASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 AP000867.4-201ENST00000641616 219 ntBASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 AC116353.5-201ENST00000638148 1699 ntBASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
AP4E1Q9UPM8 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
AP4E1Q9UPM8 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.08■□□□□ 0.49
AP4E1Q9UPM8 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
AP4E1Q9UPM8 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
AP4E1Q9UPM8 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 AL732292.2-201ENST00000609649 430 ntBASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 AC012313.1-201ENST00000593393 3059 ntBASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.08■□□□□ 0.48
AP4E1Q9UPM8 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 KRT18P31-201ENST00000506277 1292 ntBASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 AL121772.3-201ENST00000610840 674 ntBASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 AP001094.4-201ENST00000579008 2176 ntBASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
AP4E1Q9UPM8 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms