Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 CD276-201ENST00000318424 2738 ntTSL 5 BASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC32.9■■■□□ 2.86
SHROOM4Q9ULL8 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC32.9■■■□□ 2.86
SHROOM4Q9ULL8 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC32.9■■■□□ 2.86
SHROOM4Q9ULL8 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
SHROOM4Q9ULL8 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
SHROOM4Q9ULL8 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC32.9■■■□□ 2.86
SHROOM4Q9ULL8 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
SHROOM4Q9ULL8 AL512356.2-201ENST00000546955 174 ntBASIC32.9■■■□□ 2.86
SHROOM4Q9ULL8 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
SHROOM4Q9ULL8 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC32.9■■■□□ 2.86
SHROOM4Q9ULL8 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
SHROOM4Q9ULL8 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
SHROOM4Q9ULL8 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC32.9■■■□□ 2.86
SHROOM4Q9ULL8 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
SHROOM4Q9ULL8 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
SHROOM4Q9ULL8 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC32.89■■■□□ 2.86
SHROOM4Q9ULL8 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC32.89■■■□□ 2.86
SHROOM4Q9ULL8 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
SHROOM4Q9ULL8 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC32.89■■■□□ 2.86
SHROOM4Q9ULL8 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC32.89■■■□□ 2.86
SHROOM4Q9ULL8 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC32.89■■■□□ 2.86
SHROOM4Q9ULL8 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC32.89■■■□□ 2.86
SHROOM4Q9ULL8 AC097637.2-201ENST00000624096 1997 ntBASIC32.89■■■□□ 2.86
SHROOM4Q9ULL8 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC32.89■■■□□ 2.86
SHROOM4Q9ULL8 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC32.89■■■□□ 2.86
SHROOM4Q9ULL8 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC32.89■■■□□ 2.86
SHROOM4Q9ULL8 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
SHROOM4Q9ULL8 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC32.89■■■□□ 2.86
SHROOM4Q9ULL8 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC32.89■■■□□ 2.86
SHROOM4Q9ULL8 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC32.89■■■□□ 2.85
SHROOM4Q9ULL8 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 KRT18P55-202ENST00000578578 1546 ntBASIC32.88■■■□□ 2.85
SHROOM4Q9ULL8 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
SHROOM4Q9ULL8 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC32.87■■■□□ 2.85
SHROOM4Q9ULL8 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC32.87■■■□□ 2.85
SHROOM4Q9ULL8 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
SHROOM4Q9ULL8 OARD1-208ENST00000469104 704 ntTSL 2 BASIC32.87■■■□□ 2.85
SHROOM4Q9ULL8 COQ6-210ENST00000554920 649 ntTSL 3 BASIC32.87■■■□□ 2.85
SHROOM4Q9ULL8 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC32.87■■■□□ 2.85
SHROOM4Q9ULL8 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC32.87■■■□□ 2.85
SHROOM4Q9ULL8 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC32.87■■■□□ 2.85
SHROOM4Q9ULL8 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
SHROOM4Q9ULL8 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
SHROOM4Q9ULL8 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC32.87■■■□□ 2.85
SHROOM4Q9ULL8 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC32.87■■■□□ 2.85
SHROOM4Q9ULL8 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC32.87■■■□□ 2.85
SHROOM4Q9ULL8 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
SHROOM4Q9ULL8 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC32.87■■■□□ 2.85
SHROOM4Q9ULL8 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC32.87■■■□□ 2.85
SHROOM4Q9ULL8 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 CECR7-204ENST00000609932 568 ntTSL 2 BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 AC116407.2-201ENST00000613639 860 ntBASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 FLJ13224-201ENST00000313737 1514 ntBASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC32.86■■■□□ 2.85
SHROOM4Q9ULL8 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC32.86■■■□□ 2.85
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms